Results 1 - 20 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10735 | 3' | -58.7 | NC_002794.1 | + | 147127 | 1.1 | 0.002363 |
Target: 5'- gACGUCGACGGCGGUUCGAGACGGCCCc -3' miRNA: 3'- -UGCAGCUGCCGCCAAGCUCUGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 58061 | 0.82 | 0.17566 |
Target: 5'- gGCGgccccggCGGCGGCGGgaCG-GGCGGCCCg -3' miRNA: 3'- -UGCa------GCUGCCGCCaaGCuCUGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 65939 | 0.8 | 0.232834 |
Target: 5'- gGCGUCGGCGGCGGUaucgucgCGAGcgGCGGCg- -3' miRNA: 3'- -UGCAGCUGCCGCCAa------GCUC--UGCCGgg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 14555 | 0.79 | 0.260954 |
Target: 5'- cCGUCGACGcGCGGgaggCGAGcCGGCCg -3' miRNA: 3'- uGCAGCUGC-CGCCaa--GCUCuGCCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 65987 | 0.78 | 0.272955 |
Target: 5'- aACGUCGAacugGGCGGUgaucccggcacCGAGGCGGCCg -3' miRNA: 3'- -UGCAGCUg---CCGCCAa----------GCUCUGCCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 186336 | 0.76 | 0.354274 |
Target: 5'- cACGaUCGACGGCGG--CGGcGACGuGCCCg -3' miRNA: 3'- -UGC-AGCUGCCGCCaaGCU-CUGC-CGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 121363 | 0.76 | 0.354274 |
Target: 5'- uCGUCGACGGCGuc-CGAGcCGGCCg -3' miRNA: 3'- uGCAGCUGCCGCcaaGCUCuGCCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 91219 | 0.76 | 0.361774 |
Target: 5'- gACG-CGACGGCGGacggCGcGGCGGCCg -3' miRNA: 3'- -UGCaGCUGCCGCCaa--GCuCUGCCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 55308 | 0.75 | 0.400903 |
Target: 5'- gGCGUCG-CGGCGGgcgCG-GGCGGCUUc -3' miRNA: 3'- -UGCAGCuGCCGCCaa-GCuCUGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 44461 | 0.75 | 0.425638 |
Target: 5'- gACGUCGGCGGCGG----AGACcGCCCc -3' miRNA: 3'- -UGCAGCUGCCGCCaagcUCUGcCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 34080 | 0.75 | 0.425638 |
Target: 5'- cCGcCGGCGGcCGGgcagccgUCG-GGCGGCCCg -3' miRNA: 3'- uGCaGCUGCC-GCCa------AGCuCUGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 140110 | 0.74 | 0.442624 |
Target: 5'- gGCGaUCGACGGCGG-UCGAcgGugGGCg- -3' miRNA: 3'- -UGC-AGCUGCCGCCaAGCU--CugCCGgg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 114719 | 0.74 | 0.468801 |
Target: 5'- gGCGgCGGCGGCGGcuccggguucgUCGAGcCGGCgCCg -3' miRNA: 3'- -UGCaGCUGCCGCCa----------AGCUCuGCCG-GG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 90937 | 0.74 | 0.468801 |
Target: 5'- gGCGaCGugGGCGGgcugugcgcCGAGGCccgGGCCCg -3' miRNA: 3'- -UGCaGCugCCGCCaa-------GCUCUG---CCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 50772 | 0.74 | 0.477702 |
Target: 5'- gGCGgCGACGGCGcGUcUCG-GGCGGCgCCu -3' miRNA: 3'- -UGCaGCUGCCGC-CA-AGCuCUGCCG-GG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 179990 | 0.73 | 0.495749 |
Target: 5'- gGCGguggccgCGACGGCGGgcccggccaCGAcGACGGCCg -3' miRNA: 3'- -UGCa------GCUGCCGCCaa-------GCU-CUGCCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 95761 | 0.73 | 0.495749 |
Target: 5'- cGCGg-GGCGGCGGccgCGAcGGCGGCCg -3' miRNA: 3'- -UGCagCUGCCGCCaa-GCU-CUGCCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 75471 | 0.73 | 0.495749 |
Target: 5'- cCGUaccACGGCGc--CGAGACGGCCCg -3' miRNA: 3'- uGCAgc-UGCCGCcaaGCUCUGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 129210 | 0.73 | 0.495749 |
Target: 5'- aGCGgcCGACGGCGGUggauaggcgCGAacgGGCGGCuCCg -3' miRNA: 3'- -UGCa-GCUGCCGCCAa--------GCU---CUGCCG-GG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 94006 | 0.73 | 0.495749 |
Target: 5'- gGCGcCGGCGGCGGgccggCGGGuuccgccgGCGGgCCCg -3' miRNA: 3'- -UGCaGCUGCCGCCaa---GCUC--------UGCC-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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