miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 120729 0.73 0.503971
Target:  5'- uCGUCGugggcACGGCGGUcCGGGAgcgcagacucugcUGGCCCu -3'
miRNA:   3'- uGCAGC-----UGCCGCCAaGCUCU-------------GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 107502 0.73 0.504888
Target:  5'- uUGUUGACGGgGGUgccggUCGAcgccGACGGCCg -3'
miRNA:   3'- uGCAGCUGCCgCCA-----AGCU----CUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 112320 0.73 0.514098
Target:  5'- gGCGcCGACGGCGGggagCGcGcCGGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaa--GCuCuGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 46319 0.73 0.514098
Target:  5'- gGCGgCGACGGCGccgUCGccgcGGACGGCuCCa -3'
miRNA:   3'- -UGCaGCUGCCGCca-AGC----UCUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 82049 0.73 0.532718
Target:  5'- gGCGgCGGCGGCGGcgUCGuccuCGGCCUc -3'
miRNA:   3'- -UGCaGCUGCCGCCa-AGCucu-GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 14466 0.73 0.541177
Target:  5'- gUGUCGAgCGGCGcgccgcgcucgcuGUUCGcggcGGCGGCCCg -3'
miRNA:   3'- uGCAGCU-GCCGC-------------CAAGCu---CUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 182959 0.72 0.561079
Target:  5'- -aGcCGACGGCGGccggcuccucgUUCGAgccGACGGCCg -3'
miRNA:   3'- ugCaGCUGCCGCC-----------AAGCU---CUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 37752 0.72 0.570628
Target:  5'- gGCGgcgCGGCGGCGccggCGGGAgCGGCCg -3'
miRNA:   3'- -UGCa--GCUGCCGCcaa-GCUCU-GCCGGg -5'
10735 3' -58.7 NC_002794.1 + 110631 0.72 0.570628
Target:  5'- gGCGccgCGGCGGCGGggUCGGGuuucuccgGCGGCUg -3'
miRNA:   3'- -UGCa--GCUGCCGCCa-AGCUC--------UGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 37875 0.72 0.570628
Target:  5'- gGCGUCucgGGCGGCGGgggCGGuGGCGGCg- -3'
miRNA:   3'- -UGCAG---CUGCCGCCaa-GCU-CUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 53849 0.72 0.570628
Target:  5'- gGCGUCu-CGGCGGgguucUCGAcGACGGUCUc -3'
miRNA:   3'- -UGCAGcuGCCGCCa----AGCU-CUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 110442 0.72 0.570628
Target:  5'- uCGUCGGUGGCGGaggccggCGAGcCGGCUCg -3'
miRNA:   3'- uGCAGCUGCCGCCaa-----GCUCuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 146626 0.72 0.570628
Target:  5'- gACGUCGAaGGCGGUacCGGGAgCGGCg- -3'
miRNA:   3'- -UGCAGCUgCCGCCAa-GCUCU-GCCGgg -5'
10735 3' -58.7 NC_002794.1 + 120038 0.72 0.580216
Target:  5'- gACGUCgucauGACGGCGG--CGGuGGCGGCCg -3'
miRNA:   3'- -UGCAG-----CUGCCGCCaaGCU-CUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 105785 0.72 0.589838
Target:  5'- cGCGUCGAUaGGuCGGUcUCgGAGACGGaCCg -3'
miRNA:   3'- -UGCAGCUG-CC-GCCA-AG-CUCUGCCgGG- -5'
10735 3' -58.7 NC_002794.1 + 95837 0.72 0.589838
Target:  5'- aGCGgCGGCGGCGGccgggGAGGCGGCg- -3'
miRNA:   3'- -UGCaGCUGCCGCCaag--CUCUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 104788 0.72 0.589838
Target:  5'- cACGcCGACaGGCGGUgcugcuUCGcGAUGGCCa -3'
miRNA:   3'- -UGCaGCUG-CCGCCA------AGCuCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 116942 0.72 0.589838
Target:  5'- gGCGUcccCGGCGGCGGcgUCGgcGGGCgcaggaacgGGCCCa -3'
miRNA:   3'- -UGCA---GCUGCCGCCa-AGC--UCUG---------CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 128154 0.72 0.599487
Target:  5'- gACG-CGACGGCGGcUCGcgccgcGGACGGgUCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaAGC------UCUGCCgGG- -5'
10735 3' -58.7 NC_002794.1 + 125450 0.72 0.599487
Target:  5'- -aGggCGACGGCGG--CGAGcACGGCCg -3'
miRNA:   3'- ugCa-GCUGCCGCCaaGCUC-UGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.