miRNA display CGI


Results 41 - 60 of 198 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 20980 0.72 0.599487
Target:  5'- cCGgcagCGGCGGCGGcagCGAccgcGGCGGCCa -3'
miRNA:   3'- uGCa---GCUGCCGCCaa-GCU----CUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 187672 0.72 0.599487
Target:  5'- gACGaUCgGGCGauGCGGgUCGAG-CGGCCCg -3'
miRNA:   3'- -UGC-AG-CUGC--CGCCaAGCUCuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 127352 0.71 0.613031
Target:  5'- gACGcucgCGGCGGCGGcgCGgccgcucgugucggcGGACGGCaCCu -3'
miRNA:   3'- -UGCa---GCUGCCGCCaaGC---------------UCUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 183204 0.71 0.613031
Target:  5'- cACGcCGGCGGCGcGUUCGucgccagcgaccAGgcgacccgacacgcgGCGGCCCg -3'
miRNA:   3'- -UGCaGCUGCCGC-CAAGC------------UC---------------UGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 108435 0.71 0.618844
Target:  5'- cCG-CGAcCGGCGGcacucgCGGcGGCGGCCCg -3'
miRNA:   3'- uGCaGCU-GCCGCCaa----GCU-CUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 129944 0.71 0.618844
Target:  5'- gGCGgCGGCGGCGGcUCugGAGAccuCGGUCCc -3'
miRNA:   3'- -UGCaGCUGCCGCCaAG--CUCU---GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 142386 0.71 0.618844
Target:  5'- aGCGgcggaGACGGCGGUgcaggCGGcgucGGCGGCgCCg -3'
miRNA:   3'- -UGCag---CUGCCGCCAa----GCU----CUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 107233 0.71 0.618844
Target:  5'- cGCGaCGGgGGCGGcgUCGcGGACcuGGCCCg -3'
miRNA:   3'- -UGCaGCUgCCGCCa-AGC-UCUG--CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 49401 0.71 0.628539
Target:  5'- cCGUCGgccACGGCGGccgcggCGGcGGCGGCCg -3'
miRNA:   3'- uGCAGC---UGCCGCCaa----GCU-CUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 106352 0.71 0.628539
Target:  5'- -gGUCGACGGCGGg-CGGGcgcCGGUUCg -3'
miRNA:   3'- ugCAGCUGCCGCCaaGCUCu--GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 107050 0.71 0.628539
Target:  5'- cGCGUCGGaGGCGG--CGGGcGCGGCgCCg -3'
miRNA:   3'- -UGCAGCUgCCGCCaaGCUC-UGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 141597 0.71 0.638237
Target:  5'- cGCGUCGcCgGGCGGcUCGGcGAcCGGCUCg -3'
miRNA:   3'- -UGCAGCuG-CCGCCaAGCU-CU-GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 188252 0.71 0.638237
Target:  5'- gGCGgCGGCGGCGGUa-GcGGCGGgCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCAagCuCUGCCgGG- -5'
10735 3' -58.7 NC_002794.1 + 55385 0.71 0.638237
Target:  5'- gGCGgcCGA-GGCGGc-CGAGGCGGCCg -3'
miRNA:   3'- -UGCa-GCUgCCGCCaaGCUCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 55358 0.71 0.638237
Target:  5'- gGCGgcCGA-GGCGGc-CGAGGCGGCCg -3'
miRNA:   3'- -UGCa-GCUgCCGCCaaGCUCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 12223 0.71 0.638237
Target:  5'- gGCGUCGGCGGCGcc----GGCGGCgCCg -3'
miRNA:   3'- -UGCAGCUGCCGCcaagcuCUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 67425 0.71 0.638237
Target:  5'- aGCGUCGGCGGCGuGUcgcgccgcuUCG-GGCucccGCCCg -3'
miRNA:   3'- -UGCAGCUGCCGC-CA---------AGCuCUGc---CGGG- -5'
10735 3' -58.7 NC_002794.1 + 51258 0.71 0.64793
Target:  5'- gGCGUgGG-GGCGGgcCGGGaggcaggcGCGGCCCg -3'
miRNA:   3'- -UGCAgCUgCCGCCaaGCUC--------UGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 19947 0.71 0.64793
Target:  5'- cACGgaaGACGuGCGGgcuUCGAGcuGCGGCCg -3'
miRNA:   3'- -UGCag-CUGC-CGCCa--AGCUC--UGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 145505 0.71 0.64793
Target:  5'- gGCGUgCGAaGG-GGUgcgCGAGGcCGGCCCg -3'
miRNA:   3'- -UGCA-GCUgCCgCCAa--GCUCU-GCCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.