miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 19947 0.71 0.64793
Target:  5'- cACGgaaGACGuGCGGgcuUCGAGcuGCGGCCg -3'
miRNA:   3'- -UGCag-CUGC-CGCCa--AGCUC--UGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 145505 0.71 0.64793
Target:  5'- gGCGUgCGAaGG-GGUgcgCGAGGcCGGCCCg -3'
miRNA:   3'- -UGCA-GCUgCCgCCAa--GCUCU-GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 119507 0.71 0.657612
Target:  5'- -gGUCGuCGGCGGcgCgGAGcCGGCCg -3'
miRNA:   3'- ugCAGCuGCCGCCaaG-CUCuGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 112351 0.7 0.666311
Target:  5'- gGCGcCGGCGGCGGggCGGGGagcugcuggaacuCGGCa- -3'
miRNA:   3'- -UGCaGCUGCCGCCaaGCUCU-------------GCCGgg -5'
10735 3' -58.7 NC_002794.1 + 120125 0.7 0.667276
Target:  5'- cGCG-CGACGGCGaccgGGGACGGgCCg -3'
miRNA:   3'- -UGCaGCUGCCGCcaagCUCUGCCgGG- -5'
10735 3' -58.7 NC_002794.1 + 94048 0.7 0.667276
Target:  5'- -aG-CGGCGGCGGUgcgGGGGCGGCg- -3'
miRNA:   3'- ugCaGCUGCCGCCAag-CUCUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 116131 0.7 0.667276
Target:  5'- cCG-CGGCGGCGG--CGGcGGCGGCCa -3'
miRNA:   3'- uGCaGCUGCCGCCaaGCU-CUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 53310 0.7 0.667276
Target:  5'- -gGUCGGcCGGCGccgCGAGAuCGGCUCg -3'
miRNA:   3'- ugCAGCU-GCCGCcaaGCUCU-GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 133381 0.7 0.667276
Target:  5'- uCGUCGucCGGCGGUcau-GAuCGGCCCg -3'
miRNA:   3'- uGCAGCu-GCCGCCAagcuCU-GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 94404 0.7 0.667276
Target:  5'- uGCGggGACcGCGGUgUGGGGCGcGCCCg -3'
miRNA:   3'- -UGCagCUGcCGCCAaGCUCUGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 191878 0.7 0.676914
Target:  5'- gGCGgagggGGCGGCGGaggCGGGAuCGGCaCCg -3'
miRNA:   3'- -UGCag---CUGCCGCCaa-GCUCU-GCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 92258 0.7 0.676914
Target:  5'- gGCGUCGcugGCGGCGGcgccgggCGAGGCGcGCa- -3'
miRNA:   3'- -UGCAGC---UGCCGCCaa-----GCUCUGC-CGgg -5'
10735 3' -58.7 NC_002794.1 + 53766 0.7 0.676914
Target:  5'- cUGcCGGCGGCGGgacgccCGcGACGcGCCCg -3'
miRNA:   3'- uGCaGCUGCCGCCaa----GCuCUGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 55165 0.7 0.686519
Target:  5'- -aGUCGAgcgcCGaGCGGgcgacUCGAGgcgGCGGCCCu -3'
miRNA:   3'- ugCAGCU----GC-CGCCa----AGCUC---UGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 113173 0.7 0.686519
Target:  5'- cGCGggCGGCGGCGGUcgCGgAGGC-GCCUc -3'
miRNA:   3'- -UGCa-GCUGCCGCCAa-GC-UCUGcCGGG- -5'
10735 3' -58.7 NC_002794.1 + 138591 0.7 0.686519
Target:  5'- cGCGUCGgcGCGGCGGa--GAG-CGGCUUu -3'
miRNA:   3'- -UGCAGC--UGCCGCCaagCUCuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 94770 0.7 0.696084
Target:  5'- uCGUCGACgaggcgcugGGCGaGUUCGAG-CGGCa- -3'
miRNA:   3'- uGCAGCUG---------CCGC-CAAGCUCuGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 32574 0.7 0.696084
Target:  5'- -aGUCGcgcGCGGCGGUgcCGGGGCcggGGCCg -3'
miRNA:   3'- ugCAGC---UGCCGCCAa-GCUCUG---CCGGg -5'
10735 3' -58.7 NC_002794.1 + 19458 0.7 0.696084
Target:  5'- cACGagCGGCGGCGGcggCGGGACccgccggucGCCCg -3'
miRNA:   3'- -UGCa-GCUGCCGCCaa-GCUCUGc--------CGGG- -5'
10735 3' -58.7 NC_002794.1 + 101490 0.7 0.705601
Target:  5'- aACGcCGGCGGcCGGUcCGAG-CGGUgCg -3'
miRNA:   3'- -UGCaGCUGCC-GCCAaGCUCuGCCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.