miRNA display CGI


Results 81 - 100 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 111756 0.7 0.715062
Target:  5'- gGCGcCGcGCGGCGccgUCGGGGCgGGCUCg -3'
miRNA:   3'- -UGCaGC-UGCCGCca-AGCUCUG-CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 78000 0.7 0.715062
Target:  5'- gGCGUuguucCGGCGGCGGcgccgUCGGGAgaacGCCCg -3'
miRNA:   3'- -UGCA-----GCUGCCGCCa----AGCUCUgc--CGGG- -5'
10735 3' -58.7 NC_002794.1 + 137611 0.7 0.715062
Target:  5'- gGCGgucgCGGCGGCGGUgcccaCGAcGACGuCCUg -3'
miRNA:   3'- -UGCa---GCUGCCGCCAa----GCU-CUGCcGGG- -5'
10735 3' -58.7 NC_002794.1 + 111120 0.69 0.724459
Target:  5'- cCGUCGACGGCGcc----GGCGGCCg -3'
miRNA:   3'- uGCAGCUGCCGCcaagcuCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 110162 0.69 0.724459
Target:  5'- cACGUCGucGCGGggcaugaGGcUCGAGAUGGgCCg -3'
miRNA:   3'- -UGCAGC--UGCCg------CCaAGCUCUGCCgGG- -5'
10735 3' -58.7 NC_002794.1 + 137315 0.69 0.724459
Target:  5'- gACGUCcACGGUuccgcggaaGGUUCcgcGGACGGCUCg -3'
miRNA:   3'- -UGCAGcUGCCG---------CCAAGc--UCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 133630 0.69 0.724459
Target:  5'- -gGUCGGuCGGUGGgaagaaggUCGGGGuCGGaCCCg -3'
miRNA:   3'- ugCAGCU-GCCGCCa-------AGCUCU-GCC-GGG- -5'
10735 3' -58.7 NC_002794.1 + 36325 0.69 0.732856
Target:  5'- cCGUCGaACGGCGcGcagUCGAGcaacccggcgugcGCGGCCa -3'
miRNA:   3'- uGCAGC-UGCCGC-Ca--AGCUC-------------UGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 18702 0.69 0.732856
Target:  5'- cACGgCGGCGGCGGUccggacgUCGGagccGACGaGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCA-------AGCU----CUGC-CGGg -5'
10735 3' -58.7 NC_002794.1 + 180865 0.69 0.733786
Target:  5'- uCGUCGgagGCGGCGGaUCc-GGCGcGCCCg -3'
miRNA:   3'- uGCAGC---UGCCGCCaAGcuCUGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 20384 0.69 0.733786
Target:  5'- uCGUCGAC-GCGGUgcggCGGGACcgggagcggGGCCa -3'
miRNA:   3'- uGCAGCUGcCGCCAa---GCUCUG---------CCGGg -5'
10735 3' -58.7 NC_002794.1 + 21905 0.69 0.743033
Target:  5'- uGCGUCGguggugGCGGCGGagaCGAcGGCGGCg- -3'
miRNA:   3'- -UGCAGC------UGCCGCCaa-GCU-CUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 147003 0.69 0.743033
Target:  5'- gACGUCGGCGGCGG--CGGccGcCGGCgCu -3'
miRNA:   3'- -UGCAGCUGCCGCCaaGCU--CuGCCGgG- -5'
10735 3' -58.7 NC_002794.1 + 141936 0.69 0.743033
Target:  5'- cCGgaucCGACGGCGGcgaccCGuuGGACGGCCg -3'
miRNA:   3'- uGCa---GCUGCCGCCaa---GC--UCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 115928 0.69 0.752193
Target:  5'- gGCG-CGGCGGCGGgc-----CGGCCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaagcucuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 121757 0.69 0.752193
Target:  5'- gACGgaGAUGGCGGUgccCGAGGCGccGCCg -3'
miRNA:   3'- -UGCagCUGCCGCCAa--GCUCUGC--CGGg -5'
10735 3' -58.7 NC_002794.1 + 141752 0.69 0.760356
Target:  5'- gACGUacuugGACGaGCGGUUCGAuuccgacGACGaGCCg -3'
miRNA:   3'- -UGCAg----CUGC-CGCCAAGCU-------CUGC-CGGg -5'
10735 3' -58.7 NC_002794.1 + 65174 0.69 0.761258
Target:  5'- gGCGcCGAgacCGGCGGgugccggCGAGGuCGGaCCCu -3'
miRNA:   3'- -UGCaGCU---GCCGCCaa-----GCUCU-GCC-GGG- -5'
10735 3' -58.7 NC_002794.1 + 49600 0.69 0.761258
Target:  5'- cGCGaucggCGACGGCGGgcgccGGCGGCgCCu -3'
miRNA:   3'- -UGCa----GCUGCCGCCaagcuCUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 60783 0.69 0.761258
Target:  5'- cCGUCGaACGGaCGGcUCGGaccauGACGGCgCCc -3'
miRNA:   3'- uGCAGC-UGCC-GCCaAGCU-----CUGCCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.