miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 80006 0.66 0.880817
Target:  5'- gACGagGACGGCGa--CGAGGaGGCCg -3'
miRNA:   3'- -UGCagCUGCCGCcaaGCUCUgCCGGg -5'
10735 3' -58.7 NC_002794.1 + 189957 0.66 0.880817
Target:  5'- gACGgacCGACGGaCGGgccgcccgcUCGcccGACGGUCCg -3'
miRNA:   3'- -UGCa--GCUGCC-GCCa--------AGCu--CUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 145928 0.66 0.876772
Target:  5'- aGCGgaggggcCGGCGagaGCGGUUCGGGagucgcgagcgcccaGCGcGCCCa -3'
miRNA:   3'- -UGCa------GCUGC---CGCCAAGCUC---------------UGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 37786 0.66 0.874036
Target:  5'- uCGUCGGCcgcaGGCGccucgaCGAGACGGUCg -3'
miRNA:   3'- uGCAGCUG----CCGCcaa---GCUCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 78439 0.66 0.874036
Target:  5'- -gGUCG-CGGCGGacgCG-GACGcGCUCg -3'
miRNA:   3'- ugCAGCuGCCGCCaa-GCuCUGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 99932 0.66 0.874036
Target:  5'- gGCGUgGucuuGCGGCuGUUCGGccggaccgccGACGGCgCCa -3'
miRNA:   3'- -UGCAgC----UGCCGcCAAGCU----------CUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 133899 0.66 0.874036
Target:  5'- uGCGUCGucUGGauuCGGUcuaCGAGACGGCggCCg -3'
miRNA:   3'- -UGCAGCu-GCC---GCCAa--GCUCUGCCG--GG- -5'
10735 3' -58.7 NC_002794.1 + 44225 0.66 0.874036
Target:  5'- gGCGcCGAgGGCucGGUgCcGGGCGGCUCg -3'
miRNA:   3'- -UGCaGCUgCCG--CCAaGcUCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 150230 0.66 0.874036
Target:  5'- uGCGUgCGACGGCagcuGGaagCGcuGCGGCUCg -3'
miRNA:   3'- -UGCA-GCUGCCG----CCaa-GCucUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 125728 0.66 0.86706
Target:  5'- aACGggaggaggCGGaGGCGGgccgCGGGACGGCggCCg -3'
miRNA:   3'- -UGCa-------GCUgCCGCCaa--GCUCUGCCG--GG- -5'
10735 3' -58.7 NC_002794.1 + 158707 0.66 0.86706
Target:  5'- -gGUcCGugGGaugaGGgucucgagaugUUCGaAGACGGCCCg -3'
miRNA:   3'- ugCA-GCugCCg---CC-----------AAGC-UCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 86995 0.66 0.86706
Target:  5'- gGCGgcuuUCGGCGGCgugGGUUcCGGcGAgGGUCCg -3'
miRNA:   3'- -UGC----AGCUGCCG---CCAA-GCU-CUgCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 14664 0.66 0.86706
Target:  5'- gGCGUCGguccgacucgcgGCGGCGGUcgCGcugcuccuGACGGCg- -3'
miRNA:   3'- -UGCAGC------------UGCCGCCAa-GCu-------CUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 154377 0.66 0.86706
Target:  5'- cGCGgCGGCGGCGGgcacgcccgUUCGcGugGuGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCC---------AAGCuCugC-CGGg -5'
10735 3' -58.7 NC_002794.1 + 12930 0.67 0.859894
Target:  5'- cCGUCGACgaccuGGCGGacUUCGuGGCguuGGCCg -3'
miRNA:   3'- uGCAGCUG-----CCGCC--AAGCuCUG---CCGGg -5'
10735 3' -58.7 NC_002794.1 + 67956 0.67 0.859894
Target:  5'- cCGagGACGGCGGgcCcAGACGGgUCg -3'
miRNA:   3'- uGCagCUGCCGCCaaGcUCUGCCgGG- -5'
10735 3' -58.7 NC_002794.1 + 106966 0.67 0.859894
Target:  5'- cGCGUCGccucgcGCGGCGGccggcacggCGGuGGCGGCgCu -3'
miRNA:   3'- -UGCAGC------UGCCGCCaa-------GCU-CUGCCGgG- -5'
10735 3' -58.7 NC_002794.1 + 70854 0.67 0.859894
Target:  5'- gACGUgccggccuccucCGGCGGCGGca-GcGGCGGCUCc -3'
miRNA:   3'- -UGCA------------GCUGCCGCCaagCuCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 17251 0.67 0.859894
Target:  5'- --uUCGACGGCGG--CGAccCGGCUCg -3'
miRNA:   3'- ugcAGCUGCCGCCaaGCUcuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 598 0.67 0.859894
Target:  5'- cCGuUCGugGcCGGgugCGgucAGGCGGCCCg -3'
miRNA:   3'- uGC-AGCugCcGCCaa-GC---UCUGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.