miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 64810 0.67 0.852544
Target:  5'- gACGccgCgGACGGCGG--CGAGcCGGCgCCg -3'
miRNA:   3'- -UGCa--G-CUGCCGCCaaGCUCuGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 114824 0.67 0.852544
Target:  5'- cGCGcUCucCGGCGGc-CGAGuCGGCUCg -3'
miRNA:   3'- -UGC-AGcuGCCGCCaaGCUCuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 100528 0.67 0.845014
Target:  5'- -gGUCGGCGGCaccgaGGagcagCG-GGCGGCCUu -3'
miRNA:   3'- ugCAGCUGCCG-----CCaa---GCuCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 179603 0.67 0.845014
Target:  5'- cACGUCGAgGaGCGGcgCGAgcGACuGCCg -3'
miRNA:   3'- -UGCAGCUgC-CGCCaaGCU--CUGcCGGg -5'
10735 3' -58.7 NC_002794.1 + 189545 0.67 0.845014
Target:  5'- -aGUCGAuccaccacaUGGCGGUcccgcUCGgucGGcCGGCCCg -3'
miRNA:   3'- ugCAGCU---------GCCGCCA-----AGC---UCuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 65082 0.67 0.845014
Target:  5'- ---cCGGCGGCGGcUCGA--UGGUCCg -3'
miRNA:   3'- ugcaGCUGCCGCCaAGCUcuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 20638 0.67 0.845014
Target:  5'- uGCcUCGACGGCuGGUgCGAGcaaGgGGUCCu -3'
miRNA:   3'- -UGcAGCUGCCG-CCAaGCUC---UgCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 84152 0.67 0.845014
Target:  5'- aGCG-CGACGGCGccUCcucuCGGCCCa -3'
miRNA:   3'- -UGCaGCUGCCGCcaAGcucuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 63449 0.67 0.843487
Target:  5'- cACGgccgCGGCGGCGacgaugacgaCGAGGCGGCggCCg -3'
miRNA:   3'- -UGCa---GCUGCCGCcaa-------GCUCUGCCG--GG- -5'
10735 3' -58.7 NC_002794.1 + 19498 0.67 0.842721
Target:  5'- cCGaCGACGGCGGaggUCGcgccgcucGGagcgccggcgcggcGCGGCCCg -3'
miRNA:   3'- uGCaGCUGCCGCCa--AGC--------UC--------------UGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 145322 0.67 0.83731
Target:  5'- cGCG-CGGCgGGCGGcgcUCGGGcccgaGCGGgCCCg -3'
miRNA:   3'- -UGCaGCUG-CCGCCa--AGCUC-----UGCC-GGG- -5'
10735 3' -58.7 NC_002794.1 + 98972 0.67 0.83731
Target:  5'- cCGUCGGCGGCGccGUggccUCGGuggucGGCGGCUUc -3'
miRNA:   3'- uGCAGCUGCCGC--CA----AGCU-----CUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 170951 0.67 0.834966
Target:  5'- gUGUCGACGGuUGGUUCGgaaaaGGAUuugucuugaugcuaGGUCCa -3'
miRNA:   3'- uGCAGCUGCC-GCCAAGC-----UCUG--------------CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 78108 0.67 0.82944
Target:  5'- aACG-CGGCGGCGccUCcAGACGccGCCCg -3'
miRNA:   3'- -UGCaGCUGCCGCcaAGcUCUGC--CGGG- -5'
10735 3' -58.7 NC_002794.1 + 94470 0.67 0.82944
Target:  5'- gACGgcaaCGGCGGCGGcg-GAcGCGGCCg -3'
miRNA:   3'- -UGCa---GCUGCCGCCaagCUcUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 62084 0.67 0.82944
Target:  5'- gGCGaCGACGGCgacgcGGcgCGccGGACGGUCUg -3'
miRNA:   3'- -UGCaGCUGCCG-----CCaaGC--UCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 116441 0.67 0.82944
Target:  5'- gACGcCGACGGUGGcgaugaCGAaGAgCGGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaa----GCU-CU-GCCGGg -5'
10735 3' -58.7 NC_002794.1 + 87354 0.67 0.82944
Target:  5'- aGCGggucCGGCGGCGagcggcGUUCuGGGCGGCgCg -3'
miRNA:   3'- -UGCa---GCUGCCGC------CAAGcUCUGCCGgG- -5'
10735 3' -58.7 NC_002794.1 + 106379 0.67 0.82944
Target:  5'- cGCGgagggcaGACGGCGGgcgaacggUCGGaccccGGCGGCgCCg -3'
miRNA:   3'- -UGCag-----CUGCCGCCa-------AGCU-----CUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 190993 0.67 0.82944
Target:  5'- cGCGgCGACGGCG--UCGcGAuCGGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCcaAGCuCU-GCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.