miRNA display CGI


Results 81 - 100 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 184579 0.68 0.796413
Target:  5'- cGCGgCGGCGGCGGccaCGc-GCGGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaa-GCucUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 129168 0.68 0.796413
Target:  5'- cGCGgcCGAUGGCcGUUCGAu-CGGCCUc -3'
miRNA:   3'- -UGCa-GCUGCCGcCAAGCUcuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 4175 0.68 0.787805
Target:  5'- uCGUCG-CGGUGGgucgUCGAGGCaaGGCg- -3'
miRNA:   3'- uGCAGCuGCCGCCa---AGCUCUG--CCGgg -5'
10735 3' -58.7 NC_002794.1 + 119437 0.68 0.787805
Target:  5'- -gGUcCGACGGCGGcggCGGuGGCGGCg- -3'
miRNA:   3'- ugCA-GCUGCCGCCaa-GCU-CUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 32872 0.68 0.787805
Target:  5'- gGCGggCGGCGGCGG--CGGcGGCGGCa- -3'
miRNA:   3'- -UGCa-GCUGCCGCCaaGCU-CUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 99594 0.68 0.785198
Target:  5'- gGCG-CGGCGGCGGcgCGcgcucgcgccgccuCGGCCCc -3'
miRNA:   3'- -UGCaGCUGCCGCCaaGCucu-----------GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 142957 0.68 0.784326
Target:  5'- -aGUCGGCGGCGucgagcuccucgUCGAGgggcuGCGuGCCCg -3'
miRNA:   3'- ugCAGCUGCCGCca----------AGCUC-----UGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 156544 0.68 0.779072
Target:  5'- cGCGUCGGCcGUGGaUUCGGcACGcGCCUg -3'
miRNA:   3'- -UGCAGCUGcCGCC-AAGCUcUGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 48434 0.68 0.779072
Target:  5'- gGCGgaggUGGCGGCGGccaUCGGGACacaGCCg -3'
miRNA:   3'- -UGCa---GCUGCCGCCa--AGCUCUGc--CGGg -5'
10735 3' -58.7 NC_002794.1 + 112745 0.68 0.779072
Target:  5'- cGCGgugcuccgCGGCGGCGGggUCGGGGugaGGUCUc -3'
miRNA:   3'- -UGCa-------GCUGCCGCCa-AGCUCUg--CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 21518 0.68 0.779072
Target:  5'- uCGagGACGGgCGGaUCGGGAuCGGCUa -3'
miRNA:   3'- uGCagCUGCC-GCCaAGCUCU-GCCGGg -5'
10735 3' -58.7 NC_002794.1 + 21650 0.68 0.77022
Target:  5'- gACGaagaagCGGCGGCGGUggCGGcGGCGguauucGCCCg -3'
miRNA:   3'- -UGCa-----GCUGCCGCCAa-GCU-CUGC------CGGG- -5'
10735 3' -58.7 NC_002794.1 + 129995 0.68 0.77022
Target:  5'- gACGUCGaACGGCcccGGagcgugCGGGuCGGCCUc -3'
miRNA:   3'- -UGCAGC-UGCCG---CCaa----GCUCuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 92318 0.68 0.77022
Target:  5'- cGCGggCGGCGGgGGccCGggcGGGCGGCUCg -3'
miRNA:   3'- -UGCa-GCUGCCgCCaaGC---UCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 34749 0.68 0.77022
Target:  5'- cGCG-CGACGGCGcggUGGGACGcggcacggccGCCCg -3'
miRNA:   3'- -UGCaGCUGCCGCcaaGCUCUGC----------CGGG- -5'
10735 3' -58.7 NC_002794.1 + 113613 0.68 0.767542
Target:  5'- aGCGcCG-CGGCcaGGUucagguugaacgucUCGAGcaGCGGCCCg -3'
miRNA:   3'- -UGCaGCuGCCG--CCA--------------AGCUC--UGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 108312 0.69 0.761258
Target:  5'- uGCGcCGGCGGUGGgUCuuGGACGGCg- -3'
miRNA:   3'- -UGCaGCUGCCGCCaAGc-UCUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 49600 0.69 0.761258
Target:  5'- cGCGaucggCGACGGCGGgcgccGGCGGCgCCu -3'
miRNA:   3'- -UGCa----GCUGCCGCCaagcuCUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 65174 0.69 0.761258
Target:  5'- gGCGcCGAgacCGGCGGgugccggCGAGGuCGGaCCCu -3'
miRNA:   3'- -UGCaGCU---GCCGCCaa-----GCUCU-GCC-GGG- -5'
10735 3' -58.7 NC_002794.1 + 3755 0.69 0.761258
Target:  5'- cGCGUC-ACGGCGGggCGGGggagugacucaGCGggaGCCCu -3'
miRNA:   3'- -UGCAGcUGCCGCCaaGCUC-----------UGC---CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.