Results 101 - 120 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10735 | 3' | -58.7 | NC_002794.1 | + | 108312 | 0.69 | 0.761258 |
Target: 5'- uGCGcCGGCGGUGGgUCuuGGACGGCg- -3' miRNA: 3'- -UGCaGCUGCCGCCaAGc-UCUGCCGgg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 141752 | 0.69 | 0.760356 |
Target: 5'- gACGUacuugGACGaGCGGUUCGAuuccgacGACGaGCCg -3' miRNA: 3'- -UGCAg----CUGC-CGCCAAGCU-------CUGC-CGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 115928 | 0.69 | 0.752193 |
Target: 5'- gGCG-CGGCGGCGGgc-----CGGCCCg -3' miRNA: 3'- -UGCaGCUGCCGCCaagcucuGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 121757 | 0.69 | 0.752193 |
Target: 5'- gACGgaGAUGGCGGUgccCGAGGCGccGCCg -3' miRNA: 3'- -UGCagCUGCCGCCAa--GCUCUGC--CGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 141936 | 0.69 | 0.743033 |
Target: 5'- cCGgaucCGACGGCGGcgaccCGuuGGACGGCCg -3' miRNA: 3'- uGCa---GCUGCCGCCaa---GC--UCUGCCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 21905 | 0.69 | 0.743033 |
Target: 5'- uGCGUCGguggugGCGGCGGagaCGAcGGCGGCg- -3' miRNA: 3'- -UGCAGC------UGCCGCCaa-GCU-CUGCCGgg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 147003 | 0.69 | 0.743033 |
Target: 5'- gACGUCGGCGGCGG--CGGccGcCGGCgCu -3' miRNA: 3'- -UGCAGCUGCCGCCaaGCU--CuGCCGgG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 180865 | 0.69 | 0.733786 |
Target: 5'- uCGUCGgagGCGGCGGaUCc-GGCGcGCCCg -3' miRNA: 3'- uGCAGC---UGCCGCCaAGcuCUGC-CGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 20384 | 0.69 | 0.733786 |
Target: 5'- uCGUCGAC-GCGGUgcggCGGGACcgggagcggGGCCa -3' miRNA: 3'- uGCAGCUGcCGCCAa---GCUCUG---------CCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 18702 | 0.69 | 0.732856 |
Target: 5'- cACGgCGGCGGCGGUccggacgUCGGagccGACGaGCCg -3' miRNA: 3'- -UGCaGCUGCCGCCA-------AGCU----CUGC-CGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 36325 | 0.69 | 0.732856 |
Target: 5'- cCGUCGaACGGCGcGcagUCGAGcaacccggcgugcGCGGCCa -3' miRNA: 3'- uGCAGC-UGCCGC-Ca--AGCUC-------------UGCCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 111120 | 0.69 | 0.724459 |
Target: 5'- cCGUCGACGGCGcc----GGCGGCCg -3' miRNA: 3'- uGCAGCUGCCGCcaagcuCUGCCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 110162 | 0.69 | 0.724459 |
Target: 5'- cACGUCGucGCGGggcaugaGGcUCGAGAUGGgCCg -3' miRNA: 3'- -UGCAGC--UGCCg------CCaAGCUCUGCCgGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 133630 | 0.69 | 0.724459 |
Target: 5'- -gGUCGGuCGGUGGgaagaaggUCGGGGuCGGaCCCg -3' miRNA: 3'- ugCAGCU-GCCGCCa-------AGCUCU-GCC-GGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 137315 | 0.69 | 0.724459 |
Target: 5'- gACGUCcACGGUuccgcggaaGGUUCcgcGGACGGCUCg -3' miRNA: 3'- -UGCAGcUGCCG---------CCAAGc--UCUGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 78000 | 0.7 | 0.715062 |
Target: 5'- gGCGUuguucCGGCGGCGGcgccgUCGGGAgaacGCCCg -3' miRNA: 3'- -UGCA-----GCUGCCGCCa----AGCUCUgc--CGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 111756 | 0.7 | 0.715062 |
Target: 5'- gGCGcCGcGCGGCGccgUCGGGGCgGGCUCg -3' miRNA: 3'- -UGCaGC-UGCCGCca-AGCUCUG-CCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 137611 | 0.7 | 0.715062 |
Target: 5'- gGCGgucgCGGCGGCGGUgcccaCGAcGACGuCCUg -3' miRNA: 3'- -UGCa---GCUGCCGCCAa----GCU-CUGCcGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 101490 | 0.7 | 0.705601 |
Target: 5'- aACGcCGGCGGcCGGUcCGAG-CGGUgCg -3' miRNA: 3'- -UGCaGCUGCC-GCCAaGCUCuGCCGgG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 19458 | 0.7 | 0.696084 |
Target: 5'- cACGagCGGCGGCGGcggCGGGACccgccggucGCCCg -3' miRNA: 3'- -UGCa-GCUGCCGCCaa-GCUCUGc--------CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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