miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 262 0.66 0.887401
Target:  5'- cCGcCGcGCGcGCGGacgCGAGgacgGCGGCCCu -3'
miRNA:   3'- uGCaGC-UGC-CGCCaa-GCUC----UGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 598 0.67 0.859894
Target:  5'- cCGuUCGugGcCGGgugCGgucAGGCGGCCCg -3'
miRNA:   3'- uGC-AGCugCcGCCaa-GC---UCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 3755 0.69 0.761258
Target:  5'- cGCGUC-ACGGCGGggCGGGggagugacucaGCGggaGCCCu -3'
miRNA:   3'- -UGCAGcUGCCGCCaaGCUC-----------UGC---CGGG- -5'
10735 3' -58.7 NC_002794.1 + 4175 0.68 0.787805
Target:  5'- uCGUCG-CGGUGGgucgUCGAGGCaaGGCg- -3'
miRNA:   3'- uGCAGCuGCCGCCa---AGCUCUG--CCGgg -5'
10735 3' -58.7 NC_002794.1 + 8119 0.67 0.821408
Target:  5'- aGCGggCGGCGGCcuccucGGUgacCGGcGACGGCaCCg -3'
miRNA:   3'- -UGCa-GCUGCCG------CCAa--GCU-CUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 11644 0.67 0.821408
Target:  5'- -aG-CGACGGgCGGccgaCGAcGCGGCCCg -3'
miRNA:   3'- ugCaGCUGCC-GCCaa--GCUcUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 12223 0.71 0.638237
Target:  5'- gGCGUCGGCGGCGcc----GGCGGCgCCg -3'
miRNA:   3'- -UGCAGCUGCCGCcaagcuCUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 12930 0.67 0.859894
Target:  5'- cCGUCGACgaccuGGCGGacUUCGuGGCguuGGCCg -3'
miRNA:   3'- uGCAGCUG-----CCGCC--AAGCuCUG---CCGGg -5'
10735 3' -58.7 NC_002794.1 + 14466 0.73 0.541177
Target:  5'- gUGUCGAgCGGCGcgccgcgcucgcuGUUCGcggcGGCGGCCCg -3'
miRNA:   3'- uGCAGCU-GCCGC-------------CAAGCu---CUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 14555 0.79 0.260954
Target:  5'- cCGUCGACGcGCGGgaggCGAGcCGGCCg -3'
miRNA:   3'- uGCAGCUGC-CGCCaa--GCUCuGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 14664 0.66 0.86706
Target:  5'- gGCGUCGguccgacucgcgGCGGCGGUcgCGcugcuccuGACGGCg- -3'
miRNA:   3'- -UGCAGC------------UGCCGCCAa-GCu-------CUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 17251 0.67 0.859894
Target:  5'- --uUCGACGGCGG--CGAccCGGCUCg -3'
miRNA:   3'- ugcAGCUGCCGCCaaGCUcuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 18009 0.71 0.64793
Target:  5'- uACGagGACGGCGuGUUccaacuguaCGuGACGGCCg -3'
miRNA:   3'- -UGCagCUGCCGC-CAA---------GCuCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 18702 0.69 0.732856
Target:  5'- cACGgCGGCGGCGGUccggacgUCGGagccGACGaGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCA-------AGCU----CUGC-CGGg -5'
10735 3' -58.7 NC_002794.1 + 19458 0.7 0.696084
Target:  5'- cACGagCGGCGGCGGcggCGGGACccgccggucGCCCg -3'
miRNA:   3'- -UGCa-GCUGCCGCCaa-GCUCUGc--------CGGG- -5'
10735 3' -58.7 NC_002794.1 + 19498 0.67 0.842721
Target:  5'- cCGaCGACGGCGGaggUCGcgccgcucGGagcgccggcgcggcGCGGCCCg -3'
miRNA:   3'- uGCaGCUGCCGCCa--AGC--------UC--------------UGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 19947 0.71 0.64793
Target:  5'- cACGgaaGACGuGCGGgcuUCGAGcuGCGGCCg -3'
miRNA:   3'- -UGCag-CUGC-CGCCa--AGCUC--UGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 20384 0.69 0.733786
Target:  5'- uCGUCGAC-GCGGUgcggCGGGACcgggagcggGGCCa -3'
miRNA:   3'- uGCAGCUGcCGCCAa---GCUCUG---------CCGGg -5'
10735 3' -58.7 NC_002794.1 + 20638 0.67 0.845014
Target:  5'- uGCcUCGACGGCuGGUgCGAGcaaGgGGUCCu -3'
miRNA:   3'- -UGcAGCUGCCG-CCAaGCUC---UgCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 20980 0.72 0.599487
Target:  5'- cCGgcagCGGCGGCGGcagCGAccgcGGCGGCCa -3'
miRNA:   3'- uGCa---GCUGCCGCCaa-GCU----CUGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.