miRNA display CGI


Results 21 - 40 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 21518 0.68 0.779072
Target:  5'- uCGagGACGGgCGGaUCGGGAuCGGCUa -3'
miRNA:   3'- uGCagCUGCC-GCCaAGCUCU-GCCGGg -5'
10735 3' -58.7 NC_002794.1 + 21650 0.68 0.77022
Target:  5'- gACGaagaagCGGCGGCGGUggCGGcGGCGguauucGCCCg -3'
miRNA:   3'- -UGCa-----GCUGCCGCCAa-GCU-CUGC------CGGG- -5'
10735 3' -58.7 NC_002794.1 + 21905 0.69 0.743033
Target:  5'- uGCGUCGguggugGCGGCGGagaCGAcGGCGGCg- -3'
miRNA:   3'- -UGCAGC------UGCCGCCaa-GCU-CUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 22158 0.66 0.899957
Target:  5'- aACGUCGAgugagcacCGGCGcuccaCG-GACGGCCg -3'
miRNA:   3'- -UGCAGCU--------GCCGCcaa--GCuCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 22905 0.66 0.893781
Target:  5'- -gGUgGACGGCGG--CGAccGCGGCCg -3'
miRNA:   3'- ugCAgCUGCCGCCaaGCUc-UGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 23375 0.67 0.821408
Target:  5'- -aGUCGaacgugaaGCGGCGGaugUCGAa--GGCCCg -3'
miRNA:   3'- ugCAGC--------UGCCGCCa--AGCUcugCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 26094 0.66 0.880817
Target:  5'- aGCGcCGACGGCcccGGcgaUCGccGugGGCCUg -3'
miRNA:   3'- -UGCaGCUGCCG---CCa--AGCu-CugCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 32574 0.7 0.696084
Target:  5'- -aGUCGcgcGCGGCGGUgcCGGGGCcggGGCCg -3'
miRNA:   3'- ugCAGC---UGCCGCCAa-GCUCUG---CCGGg -5'
10735 3' -58.7 NC_002794.1 + 32872 0.68 0.787805
Target:  5'- gGCGggCGGCGGCGG--CGGcGGCGGCa- -3'
miRNA:   3'- -UGCa-GCUGCCGCCaaGCU-CUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 34080 0.75 0.425638
Target:  5'- cCGcCGGCGGcCGGgcagccgUCG-GGCGGCCCg -3'
miRNA:   3'- uGCaGCUGCC-GCCa------AGCuCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 34749 0.68 0.77022
Target:  5'- cGCG-CGACGGCGcggUGGGACGcggcacggccGCCCg -3'
miRNA:   3'- -UGCaGCUGCCGCcaaGCUCUGC----------CGGG- -5'
10735 3' -58.7 NC_002794.1 + 36325 0.69 0.732856
Target:  5'- cCGUCGaACGGCGcGcagUCGAGcaacccggcgugcGCGGCCa -3'
miRNA:   3'- uGCAGC-UGCCGC-Ca--AGCUC-------------UGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 37752 0.72 0.570628
Target:  5'- gGCGgcgCGGCGGCGccggCGGGAgCGGCCg -3'
miRNA:   3'- -UGCa--GCUGCCGCcaa-GCUCU-GCCGGg -5'
10735 3' -58.7 NC_002794.1 + 37786 0.66 0.874036
Target:  5'- uCGUCGGCcgcaGGCGccucgaCGAGACGGUCg -3'
miRNA:   3'- uGCAGCUG----CCGCcaa---GCUCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 37875 0.72 0.570628
Target:  5'- gGCGUCucgGGCGGCGGgggCGGuGGCGGCg- -3'
miRNA:   3'- -UGCAG---CUGCCGCCaa-GCU-CUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 44225 0.66 0.874036
Target:  5'- gGCGcCGAgGGCucGGUgCcGGGCGGCUCg -3'
miRNA:   3'- -UGCaGCUgCCG--CCAaGcUCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 44328 0.68 0.804887
Target:  5'- aGCG-CGGCGGCGaa--GaAGACGGCgCCg -3'
miRNA:   3'- -UGCaGCUGCCGCcaagC-UCUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 44461 0.75 0.425638
Target:  5'- gACGUCGGCGGCGG----AGACcGCCCc -3'
miRNA:   3'- -UGCAGCUGCCGCCaagcUCUGcCGGG- -5'
10735 3' -58.7 NC_002794.1 + 44496 0.66 0.887401
Target:  5'- gACGUUGucucACGGCGGccc-AGACcgGGCCCg -3'
miRNA:   3'- -UGCAGC----UGCCGCCaagcUCUG--CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 46319 0.73 0.514098
Target:  5'- gGCGgCGACGGCGccgUCGccgcGGACGGCuCCa -3'
miRNA:   3'- -UGCaGCUGCCGCca-AGC----UCUGCCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.