miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 65082 0.67 0.845014
Target:  5'- ---cCGGCGGCGGcUCGA--UGGUCCg -3'
miRNA:   3'- ugcaGCUGCCGCCaAGCUcuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 65174 0.69 0.761258
Target:  5'- gGCGcCGAgacCGGCGGgugccggCGAGGuCGGaCCCu -3'
miRNA:   3'- -UGCaGCU---GCCGCCaa-----GCUCU-GCC-GGG- -5'
10735 3' -58.7 NC_002794.1 + 65939 0.8 0.232834
Target:  5'- gGCGUCGGCGGCGGUaucgucgCGAGcgGCGGCg- -3'
miRNA:   3'- -UGCAGCUGCCGCCAa------GCUC--UGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 65987 0.78 0.272955
Target:  5'- aACGUCGAacugGGCGGUgaucccggcacCGAGGCGGCCg -3'
miRNA:   3'- -UGCAGCUg---CCGCCAa----------GCUCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 67425 0.71 0.638237
Target:  5'- aGCGUCGGCGGCGuGUcgcgccgcuUCG-GGCucccGCCCg -3'
miRNA:   3'- -UGCAGCUGCCGC-CA---------AGCuCUGc---CGGG- -5'
10735 3' -58.7 NC_002794.1 + 67956 0.67 0.859894
Target:  5'- cCGagGACGGCGGgcCcAGACGGgUCg -3'
miRNA:   3'- uGCagCUGCCGCCaaGcUCUGCCgGG- -5'
10735 3' -58.7 NC_002794.1 + 70854 0.67 0.859894
Target:  5'- gACGUgccggccuccucCGGCGGCGGca-GcGGCGGCUCc -3'
miRNA:   3'- -UGCA------------GCUGCCGCCaagCuCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 75471 0.73 0.495749
Target:  5'- cCGUaccACGGCGc--CGAGACGGCCCg -3'
miRNA:   3'- uGCAgc-UGCCGCcaaGCUCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 75783 0.66 0.880817
Target:  5'- cUGUCGAUGGCGGaacaccggCGAcaacCGGCCg -3'
miRNA:   3'- uGCAGCUGCCGCCaa------GCUcu--GCCGGg -5'
10735 3' -58.7 NC_002794.1 + 78000 0.7 0.715062
Target:  5'- gGCGUuguucCGGCGGCGGcgccgUCGGGAgaacGCCCg -3'
miRNA:   3'- -UGCA-----GCUGCCGCCa----AGCUCUgc--CGGG- -5'
10735 3' -58.7 NC_002794.1 + 78108 0.67 0.82944
Target:  5'- aACG-CGGCGGCGccUCcAGACGccGCCCg -3'
miRNA:   3'- -UGCaGCUGCCGCcaAGcUCUGC--CGGG- -5'
10735 3' -58.7 NC_002794.1 + 78439 0.66 0.874036
Target:  5'- -gGUCG-CGGCGGacgCG-GACGcGCUCg -3'
miRNA:   3'- ugCAGCuGCCGCCaa-GCuCUGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 80006 0.66 0.880817
Target:  5'- gACGagGACGGCGa--CGAGGaGGCCg -3'
miRNA:   3'- -UGCagCUGCCGCcaaGCUCUgCCGGg -5'
10735 3' -58.7 NC_002794.1 + 80439 0.67 0.821408
Target:  5'- cCGcCGGCGGCcgccGGccCGucGGCGGCCCg -3'
miRNA:   3'- uGCaGCUGCCG----CCaaGCu-CUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 82049 0.73 0.532718
Target:  5'- gGCGgCGGCGGCGGcgUCGuccuCGGCCUc -3'
miRNA:   3'- -UGCaGCUGCCGCCa-AGCucu-GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 82136 0.68 0.796413
Target:  5'- gGCGUcaCGugGGCGGacaccCGGcccGACGGCuCCg -3'
miRNA:   3'- -UGCA--GCugCCGCCaa---GCU---CUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 83879 0.68 0.804887
Target:  5'- gGCG-CGACGGCcccgGGcUCGGcgcccGACGaGCCCg -3'
miRNA:   3'- -UGCaGCUGCCG----CCaAGCU-----CUGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 84152 0.67 0.845014
Target:  5'- aGCG-CGACGGCGccUCcucuCGGCCCa -3'
miRNA:   3'- -UGCaGCUGCCGCcaAGcucuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 86995 0.66 0.86706
Target:  5'- gGCGgcuuUCGGCGGCgugGGUUcCGGcGAgGGUCCg -3'
miRNA:   3'- -UGC----AGCUGCCG---CCAA-GCU-CUgCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 87354 0.67 0.82944
Target:  5'- aGCGggucCGGCGGCGagcggcGUUCuGGGCGGCgCg -3'
miRNA:   3'- -UGCa---GCUGCCGC------CAAGcUCUGCCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.