miRNA display CGI


Results 81 - 100 of 198 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 90937 0.74 0.468801
Target:  5'- gGCGaCGugGGCGGgcugugcgcCGAGGCccgGGCCCg -3'
miRNA:   3'- -UGCaGCugCCGCCaa-------GCUCUG---CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 91219 0.76 0.361774
Target:  5'- gACG-CGACGGCGGacggCGcGGCGGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaa--GCuCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 92258 0.7 0.676914
Target:  5'- gGCGUCGcugGCGGCGGcgccgggCGAGGCGcGCa- -3'
miRNA:   3'- -UGCAGC---UGCCGCCaa-----GCUCUGC-CGgg -5'
10735 3' -58.7 NC_002794.1 + 92318 0.68 0.77022
Target:  5'- cGCGggCGGCGGgGGccCGggcGGGCGGCUCg -3'
miRNA:   3'- -UGCa-GCUGCCgCCaaGC---UCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 94006 0.73 0.495749
Target:  5'- gGCGcCGGCGGCGGgccggCGGGuuccgccgGCGGgCCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaa---GCUC--------UGCC-GGG- -5'
10735 3' -58.7 NC_002794.1 + 94048 0.7 0.667276
Target:  5'- -aG-CGGCGGCGGUgcgGGGGCGGCg- -3'
miRNA:   3'- ugCaGCUGCCGCCAag-CUCUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 94404 0.7 0.667276
Target:  5'- uGCGggGACcGCGGUgUGGGGCGcGCCCg -3'
miRNA:   3'- -UGCagCUGcCGCCAaGCUCUGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 94470 0.67 0.82944
Target:  5'- gACGgcaaCGGCGGCGGcg-GAcGCGGCCg -3'
miRNA:   3'- -UGCa---GCUGCCGCCaagCUcUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 94770 0.7 0.696084
Target:  5'- uCGUCGACgaggcgcugGGCGaGUUCGAG-CGGCa- -3'
miRNA:   3'- uGCAGCUG---------CCGC-CAAGCUCuGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 95761 0.73 0.495749
Target:  5'- cGCGg-GGCGGCGGccgCGAcGGCGGCCg -3'
miRNA:   3'- -UGCagCUGCCGCCaa-GCU-CUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 95837 0.72 0.589838
Target:  5'- aGCGgCGGCGGCGGccgggGAGGCGGCg- -3'
miRNA:   3'- -UGCaGCUGCCGCCaag--CUCUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 98465 0.68 0.796413
Target:  5'- aGCGUCGACGGgaCGGaa-GAGcAgGGCCa -3'
miRNA:   3'- -UGCAGCUGCC--GCCaagCUC-UgCCGGg -5'
10735 3' -58.7 NC_002794.1 + 98972 0.67 0.83731
Target:  5'- cCGUCGGCGGCGccGUggccUCGGuggucGGCGGCUUc -3'
miRNA:   3'- uGCAGCUGCCGC--CA----AGCU-----CUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 99594 0.68 0.785198
Target:  5'- gGCG-CGGCGGCGGcgCGcgcucgcgccgccuCGGCCCc -3'
miRNA:   3'- -UGCaGCUGCCGCCaaGCucu-----------GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 99932 0.66 0.874036
Target:  5'- gGCGUgGucuuGCGGCuGUUCGGccggaccgccGACGGCgCCa -3'
miRNA:   3'- -UGCAgC----UGCCGcCAAGCU----------CUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 100528 0.67 0.845014
Target:  5'- -gGUCGGCGGCaccgaGGagcagCG-GGCGGCCUu -3'
miRNA:   3'- ugCAGCUGCCG-----CCaa---GCuCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 101490 0.7 0.705601
Target:  5'- aACGcCGGCGGcCGGUcCGAG-CGGUgCg -3'
miRNA:   3'- -UGCaGCUGCC-GCCAaGCUCuGCCGgG- -5'
10735 3' -58.7 NC_002794.1 + 101588 0.68 0.813221
Target:  5'- cCG-CGGcCGGgGGggCGGGugcCGGCCCg -3'
miRNA:   3'- uGCaGCU-GCCgCCaaGCUCu--GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 104788 0.72 0.589838
Target:  5'- cACGcCGACaGGCGGUgcugcuUCGcGAUGGCCa -3'
miRNA:   3'- -UGCaGCUG-CCGCCA------AGCuCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 105785 0.72 0.589838
Target:  5'- cGCGUCGAUaGGuCGGUcUCgGAGACGGaCCg -3'
miRNA:   3'- -UGCAGCUG-CC-GCCA-AG-CUCUGCCgGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.