miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 191878 0.7 0.676914
Target:  5'- gGCGgagggGGCGGCGGaggCGGGAuCGGCaCCg -3'
miRNA:   3'- -UGCag---CUGCCGCCaa-GCUCU-GCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 190993 0.67 0.82944
Target:  5'- cGCGgCGACGGCG--UCGcGAuCGGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCcaAGCuCU-GCCGGg -5'
10735 3' -58.7 NC_002794.1 + 189957 0.66 0.880817
Target:  5'- gACGgacCGACGGaCGGgccgcccgcUCGcccGACGGUCCg -3'
miRNA:   3'- -UGCa--GCUGCC-GCCa--------AGCu--CUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 189545 0.67 0.845014
Target:  5'- -aGUCGAuccaccacaUGGCGGUcccgcUCGgucGGcCGGCCCg -3'
miRNA:   3'- ugCAGCU---------GCCGCCA-----AGC---UCuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 188252 0.71 0.638237
Target:  5'- gGCGgCGGCGGCGGUa-GcGGCGGgCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCAagCuCUGCCgGG- -5'
10735 3' -58.7 NC_002794.1 + 187672 0.72 0.599487
Target:  5'- gACGaUCgGGCGauGCGGgUCGAG-CGGCCCg -3'
miRNA:   3'- -UGC-AG-CUGC--CGCCaAGCUCuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 186336 0.76 0.354274
Target:  5'- cACGaUCGACGGCGG--CGGcGACGuGCCCg -3'
miRNA:   3'- -UGC-AGCUGCCGCCaaGCU-CUGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 184579 0.68 0.796413
Target:  5'- cGCGgCGGCGGCGGccaCGc-GCGGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaa-GCucUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 183204 0.71 0.613031
Target:  5'- cACGcCGGCGGCGcGUUCGucgccagcgaccAGgcgacccgacacgcgGCGGCCCg -3'
miRNA:   3'- -UGCaGCUGCCGC-CAAGC------------UC---------------UGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 182959 0.72 0.561079
Target:  5'- -aGcCGACGGCGGccggcuccucgUUCGAgccGACGGCCg -3'
miRNA:   3'- ugCaGCUGCCGCC-----------AAGCU---CUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 180865 0.69 0.733786
Target:  5'- uCGUCGgagGCGGCGGaUCc-GGCGcGCCCg -3'
miRNA:   3'- uGCAGC---UGCCGCCaAGcuCUGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 179990 0.73 0.495749
Target:  5'- gGCGguggccgCGACGGCGGgcccggccaCGAcGACGGCCg -3'
miRNA:   3'- -UGCa------GCUGCCGCCaa-------GCU-CUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 179684 0.67 0.821408
Target:  5'- gGCGgCGACGGUGGcggCGGcGACGGUg- -3'
miRNA:   3'- -UGCaGCUGCCGCCaa-GCU-CUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 179603 0.67 0.845014
Target:  5'- cACGUCGAgGaGCGGcgCGAgcGACuGCCg -3'
miRNA:   3'- -UGCAGCUgC-CGCCaaGCU--CUGcCGGg -5'
10735 3' -58.7 NC_002794.1 + 177706 0.71 0.64793
Target:  5'- cACGuUCGAucuaCGGCGGUccaCGGGGCGGaUCCg -3'
miRNA:   3'- -UGC-AGCU----GCCGCCAa--GCUCUGCC-GGG- -5'
10735 3' -58.7 NC_002794.1 + 170951 0.67 0.834966
Target:  5'- gUGUCGACGGuUGGUUCGgaaaaGGAUuugucuugaugcuaGGUCCa -3'
miRNA:   3'- uGCAGCUGCC-GCCAAGC-----UCUG--------------CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 158707 0.66 0.86706
Target:  5'- -gGUcCGugGGaugaGGgucucgagaugUUCGaAGACGGCCCg -3'
miRNA:   3'- ugCA-GCugCCg---CC-----------AAGC-UCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 156544 0.68 0.779072
Target:  5'- cGCGUCGGCcGUGGaUUCGGcACGcGCCUg -3'
miRNA:   3'- -UGCAGCUGcCGCC-AAGCUcUGC-CGGG- -5'
10735 3' -58.7 NC_002794.1 + 154377 0.66 0.86706
Target:  5'- cGCGgCGGCGGCGGgcacgcccgUUCGcGugGuGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCC---------AAGCuCugC-CGGg -5'
10735 3' -58.7 NC_002794.1 + 152632 0.66 0.887401
Target:  5'- uCGUCcugGGCGGC-GUUCGAG-CGGCg- -3'
miRNA:   3'- uGCAG---CUGCCGcCAAGCUCuGCCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.