miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 138704 0.68 0.804887
Target:  5'- aAUGagGGCGGCGuGgacucgcgUCGAGcCGGCUCg -3'
miRNA:   3'- -UGCagCUGCCGC-Ca-------AGCUCuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 138591 0.7 0.686519
Target:  5'- cGCGUCGgcGCGGCGGa--GAG-CGGCUUu -3'
miRNA:   3'- -UGCAGC--UGCCGCCaagCUCuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 137611 0.7 0.715062
Target:  5'- gGCGgucgCGGCGGCGGUgcccaCGAcGACGuCCUg -3'
miRNA:   3'- -UGCa---GCUGCCGCCAa----GCU-CUGCcGGG- -5'
10735 3' -58.7 NC_002794.1 + 137315 0.69 0.724459
Target:  5'- gACGUCcACGGUuccgcggaaGGUUCcgcGGACGGCUCg -3'
miRNA:   3'- -UGCAGcUGCCG---------CCAAGc--UCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 133899 0.66 0.874036
Target:  5'- uGCGUCGucUGGauuCGGUcuaCGAGACGGCggCCg -3'
miRNA:   3'- -UGCAGCu-GCC---GCCAa--GCUCUGCCG--GG- -5'
10735 3' -58.7 NC_002794.1 + 133630 0.69 0.724459
Target:  5'- -gGUCGGuCGGUGGgaagaaggUCGGGGuCGGaCCCg -3'
miRNA:   3'- ugCAGCU-GCCGCCa-------AGCUCU-GCC-GGG- -5'
10735 3' -58.7 NC_002794.1 + 133381 0.7 0.667276
Target:  5'- uCGUCGucCGGCGGUcau-GAuCGGCCCg -3'
miRNA:   3'- uGCAGCu-GCCGCCAagcuCU-GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 131564 0.66 0.887401
Target:  5'- -gGUCGgcGCGGCGcccgUCuuGACGGCCUc -3'
miRNA:   3'- ugCAGC--UGCCGCca--AGcuCUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 130622 0.68 0.796413
Target:  5'- -gGUUGACGGU-GUUCGGcgucGcCGGCCCg -3'
miRNA:   3'- ugCAGCUGCCGcCAAGCU----CuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 129995 0.68 0.77022
Target:  5'- gACGUCGaACGGCcccGGagcgugCGGGuCGGCCUc -3'
miRNA:   3'- -UGCAGC-UGCCG---CCaa----GCUCuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 129944 0.71 0.618844
Target:  5'- gGCGgCGGCGGCGGcUCugGAGAccuCGGUCCc -3'
miRNA:   3'- -UGCaGCUGCCGCCaAG--CUCU---GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 129210 0.73 0.495749
Target:  5'- aGCGgcCGACGGCGGUggauaggcgCGAacgGGCGGCuCCg -3'
miRNA:   3'- -UGCa-GCUGCCGCCAa--------GCU---CUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 129168 0.68 0.796413
Target:  5'- cGCGgcCGAUGGCcGUUCGAu-CGGCCUc -3'
miRNA:   3'- -UGCa-GCUGCCGcCAAGCUcuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 129130 0.68 0.796413
Target:  5'- cCGUCuggaACGGCGcgUCGAGacugugucGCGGCCCu -3'
miRNA:   3'- uGCAGc---UGCCGCcaAGCUC--------UGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 128154 0.72 0.599487
Target:  5'- gACG-CGACGGCGGcUCGcgccgcGGACGGgUCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaAGC------UCUGCCgGG- -5'
10735 3' -58.7 NC_002794.1 + 127352 0.71 0.613031
Target:  5'- gACGcucgCGGCGGCGGcgCGgccgcucgugucggcGGACGGCaCCu -3'
miRNA:   3'- -UGCa---GCUGCCGCCaaGC---------------UCUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 126395 0.66 0.887401
Target:  5'- uGCG-CGGCGGCGug-CGcGGCGGUCg -3'
miRNA:   3'- -UGCaGCUGCCGCcaaGCuCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 125728 0.66 0.86706
Target:  5'- aACGggaggaggCGGaGGCGGgccgCGGGACGGCggCCg -3'
miRNA:   3'- -UGCa-------GCUgCCGCCaa--GCUCUGCCG--GG- -5'
10735 3' -58.7 NC_002794.1 + 125450 0.72 0.599487
Target:  5'- -aGggCGACGGCGG--CGAGcACGGCCg -3'
miRNA:   3'- ugCa-GCUGCCGCCaaGCUC-UGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 124399 0.66 0.887401
Target:  5'- cGCGUCGcCGGUcg-UCGGGGCGccGUCCg -3'
miRNA:   3'- -UGCAGCuGCCGccaAGCUCUGC--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.