miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 121757 0.69 0.752193
Target:  5'- gACGgaGAUGGCGGUgccCGAGGCGccGCCg -3'
miRNA:   3'- -UGCagCUGCCGCCAa--GCUCUGC--CGGg -5'
10735 3' -58.7 NC_002794.1 + 121518 0.68 0.813221
Target:  5'- gACGUcCGAacCGGCGGUcgUCucGACGgaGCCCg -3'
miRNA:   3'- -UGCA-GCU--GCCGCCA--AGcuCUGC--CGGG- -5'
10735 3' -58.7 NC_002794.1 + 121363 0.76 0.354274
Target:  5'- uCGUCGACGGCGuc-CGAGcCGGCCg -3'
miRNA:   3'- uGCAGCUGCCGCcaaGCUCuGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 121306 0.66 0.893781
Target:  5'- aACGUgcaGAuCGGCGGUuggcccUCGAGGC-GCCg -3'
miRNA:   3'- -UGCAg--CU-GCCGCCA------AGCUCUGcCGGg -5'
10735 3' -58.7 NC_002794.1 + 120989 0.67 0.821408
Target:  5'- uCGUguagCGGCGGCGGgccauggcCGAGGguCGGCCUc -3'
miRNA:   3'- uGCA----GCUGCCGCCaa------GCUCU--GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 120729 0.73 0.503971
Target:  5'- uCGUCGugggcACGGCGGUcCGGGAgcgcagacucugcUGGCCCu -3'
miRNA:   3'- uGCAGC-----UGCCGCCAaGCUCU-------------GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 120125 0.7 0.667276
Target:  5'- cGCG-CGACGGCGaccgGGGACGGgCCg -3'
miRNA:   3'- -UGCaGCUGCCGCcaagCUCUGCCgGG- -5'
10735 3' -58.7 NC_002794.1 + 120038 0.72 0.580216
Target:  5'- gACGUCgucauGACGGCGG--CGGuGGCGGCCg -3'
miRNA:   3'- -UGCAG-----CUGCCGCCaaGCU-CUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 119507 0.71 0.657612
Target:  5'- -gGUCGuCGGCGGcgCgGAGcCGGCCg -3'
miRNA:   3'- ugCAGCuGCCGCCaaG-CUCuGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 119437 0.68 0.787805
Target:  5'- -gGUcCGACGGCGGcggCGGuGGCGGCg- -3'
miRNA:   3'- ugCA-GCUGCCGCCaa-GCU-CUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 118245 0.68 0.796413
Target:  5'- gAUGUCGGCGGgcuggaGGUcggcCGGGGCGGCg- -3'
miRNA:   3'- -UGCAGCUGCCg-----CCAa---GCUCUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 116942 0.72 0.589838
Target:  5'- gGCGUcccCGGCGGCGGcgUCGgcGGGCgcaggaacgGGCCCa -3'
miRNA:   3'- -UGCA---GCUGCCGCCa-AGC--UCUG---------CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 116441 0.67 0.82944
Target:  5'- gACGcCGACGGUGGcgaugaCGAaGAgCGGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaa----GCU-CU-GCCGGg -5'
10735 3' -58.7 NC_002794.1 + 116131 0.7 0.667276
Target:  5'- cCG-CGGCGGCGG--CGGcGGCGGCCa -3'
miRNA:   3'- uGCaGCUGCCGCCaaGCU-CUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 115928 0.69 0.752193
Target:  5'- gGCG-CGGCGGCGGgc-----CGGCCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaagcucuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 114824 0.67 0.852544
Target:  5'- cGCGcUCucCGGCGGc-CGAGuCGGCUCg -3'
miRNA:   3'- -UGC-AGcuGCCGCCaaGCUCuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 114719 0.74 0.468801
Target:  5'- gGCGgCGGCGGCGGcuccggguucgUCGAGcCGGCgCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCa----------AGCUCuGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 113613 0.68 0.767542
Target:  5'- aGCGcCG-CGGCcaGGUucagguugaacgucUCGAGcaGCGGCCCg -3'
miRNA:   3'- -UGCaGCuGCCG--CCA--------------AGCUC--UGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 113173 0.7 0.686519
Target:  5'- cGCGggCGGCGGCGGUcgCGgAGGC-GCCUc -3'
miRNA:   3'- -UGCa-GCUGCCGCCAa-GC-UCUGcCGGG- -5'
10735 3' -58.7 NC_002794.1 + 112745 0.68 0.779072
Target:  5'- cGCGgugcuccgCGGCGGCGGggUCGGGGugaGGUCUc -3'
miRNA:   3'- -UGCa-------GCUGCCGCCa-AGCUCUg--CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.