miRNA display CGI


Results 81 - 100 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 3' -58.7 NC_002794.1 + 112351 0.7 0.666311
Target:  5'- gGCGcCGGCGGCGGggCGGGGagcugcuggaacuCGGCa- -3'
miRNA:   3'- -UGCaGCUGCCGCCaaGCUCU-------------GCCGgg -5'
10735 3' -58.7 NC_002794.1 + 112320 0.73 0.514098
Target:  5'- gGCGcCGACGGCGGggagCGcGcCGGCCg -3'
miRNA:   3'- -UGCaGCUGCCGCCaa--GCuCuGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 111756 0.7 0.715062
Target:  5'- gGCGcCGcGCGGCGccgUCGGGGCgGGCUCg -3'
miRNA:   3'- -UGCaGC-UGCCGCca-AGCUCUG-CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 111120 0.69 0.724459
Target:  5'- cCGUCGACGGCGcc----GGCGGCCg -3'
miRNA:   3'- uGCAGCUGCCGCcaagcuCUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 110631 0.72 0.570628
Target:  5'- gGCGccgCGGCGGCGGggUCGGGuuucuccgGCGGCUg -3'
miRNA:   3'- -UGCa--GCUGCCGCCa-AGCUC--------UGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 110442 0.72 0.570628
Target:  5'- uCGUCGGUGGCGGaggccggCGAGcCGGCUCg -3'
miRNA:   3'- uGCAGCUGCCGCCaa-----GCUCuGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 110267 0.66 0.893781
Target:  5'- gGCGUcgCGACGGCGGccgcCGuccucgGGCCCg -3'
miRNA:   3'- -UGCA--GCUGCCGCCaa--GCucug--CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 110162 0.69 0.724459
Target:  5'- cACGUCGucGCGGggcaugaGGcUCGAGAUGGgCCg -3'
miRNA:   3'- -UGCAGC--UGCCg------CCaAGCUCUGCCgGG- -5'
10735 3' -58.7 NC_002794.1 + 108435 0.71 0.618844
Target:  5'- cCG-CGAcCGGCGGcacucgCGGcGGCGGCCCg -3'
miRNA:   3'- uGCaGCU-GCCGCCaa----GCU-CUGCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 108312 0.69 0.761258
Target:  5'- uGCGcCGGCGGUGGgUCuuGGACGGCg- -3'
miRNA:   3'- -UGCaGCUGCCGCCaAGc-UCUGCCGgg -5'
10735 3' -58.7 NC_002794.1 + 107589 0.66 0.880817
Target:  5'- gGCGgagaaGACGGCGGgg-GAGACGGg-- -3'
miRNA:   3'- -UGCag---CUGCCGCCaagCUCUGCCggg -5'
10735 3' -58.7 NC_002794.1 + 107502 0.73 0.504888
Target:  5'- uUGUUGACGGgGGUgccggUCGAcgccGACGGCCg -3'
miRNA:   3'- uGCAGCUGCCgCCA-----AGCU----CUGCCGGg -5'
10735 3' -58.7 NC_002794.1 + 107317 0.67 0.821408
Target:  5'- gGCGcCGucCGcGCGGUUCGGcuuCGGUCCg -3'
miRNA:   3'- -UGCaGCu-GC-CGCCAAGCUcu-GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 107233 0.71 0.618844
Target:  5'- cGCGaCGGgGGCGGcgUCGcGGACcuGGCCCg -3'
miRNA:   3'- -UGCaGCUgCCGCCa-AGC-UCUG--CCGGG- -5'
10735 3' -58.7 NC_002794.1 + 107050 0.71 0.628539
Target:  5'- cGCGUCGGaGGCGG--CGGGcGCGGCgCCg -3'
miRNA:   3'- -UGCAGCUgCCGCCaaGCUC-UGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 106966 0.67 0.859894
Target:  5'- cGCGUCGccucgcGCGGCGGccggcacggCGGuGGCGGCgCu -3'
miRNA:   3'- -UGCAGC------UGCCGCCaa-------GCU-CUGCCGgG- -5'
10735 3' -58.7 NC_002794.1 + 106379 0.67 0.82944
Target:  5'- cGCGgagggcaGACGGCGGgcgaacggUCGGaccccGGCGGCgCCg -3'
miRNA:   3'- -UGCag-----CUGCCGCCa-------AGCU-----CUGCCG-GG- -5'
10735 3' -58.7 NC_002794.1 + 106352 0.71 0.628539
Target:  5'- -gGUCGACGGCGGg-CGGGcgcCGGUUCg -3'
miRNA:   3'- ugCAGCUGCCGCCaaGCUCu--GCCGGG- -5'
10735 3' -58.7 NC_002794.1 + 105785 0.72 0.589838
Target:  5'- cGCGUCGAUaGGuCGGUcUCgGAGACGGaCCg -3'
miRNA:   3'- -UGCAGCUG-CC-GCCA-AG-CUCUGCCgGG- -5'
10735 3' -58.7 NC_002794.1 + 104788 0.72 0.589838
Target:  5'- cACGcCGACaGGCGGUgcugcuUCGcGAUGGCCa -3'
miRNA:   3'- -UGCaGCUG-CCGCCA------AGCuCUGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.