Results 101 - 120 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10735 | 3' | -58.7 | NC_002794.1 | + | 106379 | 0.67 | 0.82944 |
Target: 5'- cGCGgagggcaGACGGCGGgcgaacggUCGGaccccGGCGGCgCCg -3' miRNA: 3'- -UGCag-----CUGCCGCCa-------AGCU-----CUGCCG-GG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 87354 | 0.67 | 0.82944 |
Target: 5'- aGCGggucCGGCGGCGagcggcGUUCuGGGCGGCgCg -3' miRNA: 3'- -UGCa---GCUGCCGC------CAAGcUCUGCCGgG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 116441 | 0.67 | 0.82944 |
Target: 5'- gACGcCGACGGUGGcgaugaCGAaGAgCGGCCg -3' miRNA: 3'- -UGCaGCUGCCGCCaa----GCU-CU-GCCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 62084 | 0.67 | 0.82944 |
Target: 5'- gGCGaCGACGGCgacgcGGcgCGccGGACGGUCUg -3' miRNA: 3'- -UGCaGCUGCCG-----CCaaGC--UCUGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 94470 | 0.67 | 0.82944 |
Target: 5'- gACGgcaaCGGCGGCGGcg-GAcGCGGCCg -3' miRNA: 3'- -UGCa---GCUGCCGCCaagCUcUGCCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 189545 | 0.67 | 0.845014 |
Target: 5'- -aGUCGAuccaccacaUGGCGGUcccgcUCGgucGGcCGGCCCg -3' miRNA: 3'- ugCAGCU---------GCCGCCA-----AGC---UCuGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 65082 | 0.67 | 0.845014 |
Target: 5'- ---cCGGCGGCGGcUCGA--UGGUCCg -3' miRNA: 3'- ugcaGCUGCCGCCaAGCUcuGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 86995 | 0.66 | 0.86706 |
Target: 5'- gGCGgcuuUCGGCGGCgugGGUUcCGGcGAgGGUCCg -3' miRNA: 3'- -UGC----AGCUGCCG---CCAA-GCU-CUgCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 158707 | 0.66 | 0.86706 |
Target: 5'- -gGUcCGugGGaugaGGgucucgagaugUUCGaAGACGGCCCg -3' miRNA: 3'- ugCA-GCugCCg---CC-----------AAGC-UCUGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 125728 | 0.66 | 0.86706 |
Target: 5'- aACGggaggaggCGGaGGCGGgccgCGGGACGGCggCCg -3' miRNA: 3'- -UGCa-------GCUgCCGCCaa--GCUCUGCCG--GG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 12930 | 0.67 | 0.859894 |
Target: 5'- cCGUCGACgaccuGGCGGacUUCGuGGCguuGGCCg -3' miRNA: 3'- uGCAGCUG-----CCGCC--AAGCuCUG---CCGGg -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 67956 | 0.67 | 0.859894 |
Target: 5'- cCGagGACGGCGGgcCcAGACGGgUCg -3' miRNA: 3'- uGCagCUGCCGCCaaGcUCUGCCgGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 106966 | 0.67 | 0.859894 |
Target: 5'- cGCGUCGccucgcGCGGCGGccggcacggCGGuGGCGGCgCu -3' miRNA: 3'- -UGCAGC------UGCCGCCaa-------GCU-CUGCCGgG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 70854 | 0.67 | 0.859894 |
Target: 5'- gACGUgccggccuccucCGGCGGCGGca-GcGGCGGCUCc -3' miRNA: 3'- -UGCA------------GCUGCCGCCaagCuCUGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 114824 | 0.67 | 0.852544 |
Target: 5'- cGCGcUCucCGGCGGc-CGAGuCGGCUCg -3' miRNA: 3'- -UGC-AGcuGCCGCCaaGCUCuGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 17251 | 0.67 | 0.859894 |
Target: 5'- --uUCGACGGCGG--CGAccCGGCUCg -3' miRNA: 3'- ugcAGCUGCCGCCaaGCUcuGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 598 | 0.67 | 0.859894 |
Target: 5'- cCGuUCGugGcCGGgugCGgucAGGCGGCCCg -3' miRNA: 3'- uGC-AGCugCcGCCaa-GC---UCUGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 64810 | 0.67 | 0.852544 |
Target: 5'- gACGccgCgGACGGCGG--CGAGcCGGCgCCg -3' miRNA: 3'- -UGCa--G-CUGCCGCCaaGCUCuGCCG-GG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 84152 | 0.67 | 0.845014 |
Target: 5'- aGCG-CGACGGCGccUCcucuCGGCCCa -3' miRNA: 3'- -UGCaGCUGCCGCcaAGcucuGCCGGG- -5' |
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10735 | 3' | -58.7 | NC_002794.1 | + | 20638 | 0.67 | 0.845014 |
Target: 5'- uGCcUCGACGGCuGGUgCGAGcaaGgGGUCCu -3' miRNA: 3'- -UGcAGCUGCCG-CCAaGCUC---UgCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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