miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10735 5' -58.4 NC_002794.1 + 149700 0.66 0.860338
Target:  5'- cGGGGGCCgccuGGCgggUGGGCCGcCUGccucgcuacGGCGUg -3'
miRNA:   3'- -CUCCCGG----UCG---ACCUGGCuGAC---------UUGCA- -5'
10735 5' -58.4 NC_002794.1 + 111498 0.66 0.83713
Target:  5'- cGAGGGCCAGgacgaGaGACCGGagGGACGUg -3'
miRNA:   3'- -CUCCCGGUCga---C-CUGGCUgaCUUGCA- -5'
10735 5' -58.4 NC_002794.1 + 42976 0.66 0.83713
Target:  5'- --aGGCCAGCUGGugCGcCaGGAUGc -3'
miRNA:   3'- cucCCGGUCGACCugGCuGaCUUGCa -5'
10735 5' -58.4 NC_002794.1 + 114364 0.66 0.829032
Target:  5'- cAGGGCCGGCUgcaGGGCCGcguaggcCUuGACGUc -3'
miRNA:   3'- cUCCCGGUCGA---CCUGGCu------GAcUUGCA- -5'
10735 5' -58.4 NC_002794.1 + 22626 0.67 0.812333
Target:  5'- -cGGGCCGcucgaggcGCUcGGACCG-CUGAuCGUg -3'
miRNA:   3'- cuCCCGGU--------CGA-CCUGGCuGACUuGCA- -5'
10735 5' -58.4 NC_002794.1 + 117905 0.67 0.795014
Target:  5'- --cGGCCAGCuggUGGAUCGuCuUGAACGUc -3'
miRNA:   3'- cucCCGGUCG---ACCUGGCuG-ACUUGCA- -5'
10735 5' -58.4 NC_002794.1 + 189637 0.67 0.786141
Target:  5'- --uGGCUAGCUGGcuggcugacuaGCCGGCUGGccgaGCGg -3'
miRNA:   3'- cucCCGGUCGACC-----------UGGCUGACU----UGCa -5'
10735 5' -58.4 NC_002794.1 + 111091 0.67 0.777136
Target:  5'- cAGGGUCGGCgGGcCCGGCgGGAcCGUg -3'
miRNA:   3'- cUCCCGGUCGaCCuGGCUGaCUU-GCA- -5'
10735 5' -58.4 NC_002794.1 + 56079 0.68 0.768009
Target:  5'- uGAGGGCCAGCaGG-CCGcGCaGcACGUg -3'
miRNA:   3'- -CUCCCGGUCGaCCuGGC-UGaCuUGCA- -5'
10735 5' -58.4 NC_002794.1 + 180390 0.68 0.768009
Target:  5'- --cGGCCAGCUgcucgaacgGGACCGACgucGCGUu -3'
miRNA:   3'- cucCCGGUCGA---------CCUGGCUGacuUGCA- -5'
10735 5' -58.4 NC_002794.1 + 111324 0.68 0.757836
Target:  5'- -cGGGCCAGCggcgcGGGCCGcagaucuGCcGGACGa -3'
miRNA:   3'- cuCCCGGUCGa----CCUGGC-------UGaCUUGCa -5'
10735 5' -58.4 NC_002794.1 + 44300 0.68 0.749418
Target:  5'- -cGGGCCGGCgaggcggGGAgCGACcgcGAGCGc -3'
miRNA:   3'- cuCCCGGUCGa------CCUgGCUGa--CUUGCa -5'
10735 5' -58.4 NC_002794.1 + 94017 0.68 0.749418
Target:  5'- -cGGGCCGGCgGGuuccGCCGGCgggcccgaGAGCGg -3'
miRNA:   3'- cuCCCGGUCGaCC----UGGCUGa-------CUUGCa -5'
10735 5' -58.4 NC_002794.1 + 85853 0.68 0.739021
Target:  5'- uGAGGGCCggcacacccggaaAGCgugcuUGGugCaGACUGAACGc -3'
miRNA:   3'- -CUCCCGG-------------UCG-----ACCugG-CUGACUUGCa -5'
10735 5' -58.4 NC_002794.1 + 127077 0.69 0.71113
Target:  5'- aGAGcGCCcGCcGGACCGGCUGGagaGCGg -3'
miRNA:   3'- -CUCcCGGuCGaCCUGGCUGACU---UGCa -5'
10735 5' -58.4 NC_002794.1 + 126214 0.69 0.689602
Target:  5'- cGAGGGCCAGCgguacaagaucgGGACCGugGC-GAuCGUg -3'
miRNA:   3'- -CUCCCGGUCGa-----------CCUGGC--UGaCUuGCA- -5'
10735 5' -58.4 NC_002794.1 + 122513 0.7 0.651951
Target:  5'- gGAGGGCUucuccGGCcGGAUCGACgaccaGGACGUc -3'
miRNA:   3'- -CUCCCGG-----UCGaCCUGGCUGa----CUUGCA- -5'
10735 5' -58.4 NC_002794.1 + 71238 0.7 0.641989
Target:  5'- uGGcGGCCGGCgUGGACCGGC---ACGUa -3'
miRNA:   3'- cUC-CCGGUCG-ACCUGGCUGacuUGCA- -5'
10735 5' -58.4 NC_002794.1 + 191883 0.71 0.59916
Target:  5'- aGGGGGCggcggaggcgggauCGGCaccgGGACCGGCUGAAuCGg -3'
miRNA:   3'- -CUCCCG--------------GUCGa---CCUGGCUGACUU-GCa -5'
10735 5' -58.4 NC_002794.1 + 72431 0.71 0.562626
Target:  5'- gGAGGaGCCGGCggagGGACCGGCg--GCGc -3'
miRNA:   3'- -CUCC-CGGUCGa---CCUGGCUGacuUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.