Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10735 | 5' | -58.4 | NC_002794.1 | + | 15173 | 0.72 | 0.54312 |
Target: 5'- gGAGGGCCGuucGCcgGaGACCGGgUGAACGa -3' miRNA: 3'- -CUCCCGGU---CGa-C-CUGGCUgACUUGCa -5' |
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10735 | 5' | -58.4 | NC_002794.1 | + | 157764 | 0.72 | 0.50483 |
Target: 5'- -cGGGCC-GCUGuuucGCCGACUGGugGUg -3' miRNA: 3'- cuCCCGGuCGACc---UGGCUGACUugCA- -5' |
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10735 | 5' | -58.4 | NC_002794.1 | + | 143389 | 0.72 | 0.50483 |
Target: 5'- aGAGGGUCAGCUGcugcucGACCGGCgcgggccGGGCGa -3' miRNA: 3'- -CUCCCGGUCGAC------CUGGCUGa------CUUGCa -5' |
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10735 | 5' | -58.4 | NC_002794.1 | + | 122999 | 0.73 | 0.449742 |
Target: 5'- -cGGGCCGuGCUgacGGGCCGGCUGGcCGUc -3' miRNA: 3'- cuCCCGGU-CGA---CCUGGCUGACUuGCA- -5' |
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10735 | 5' | -58.4 | NC_002794.1 | + | 147162 | 1.08 | 0.00264 |
Target: 5'- cGAGGGCCAGCUGGACCGACUGAACGUg -3' miRNA: 3'- -CUCCCGGUCGACCUGGCUGACUUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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