miRNA display CGI


Results 1 - 20 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10736 3' -61.8 NC_002794.1 + 184039 0.66 0.753049
Target:  5'- cGCGCgC--AGCGCgCGGucGCGGgCCGCg -3'
miRNA:   3'- -CGCGgGucUCGCGgGUCu-UGCC-GGCG- -5'
10736 3' -61.8 NC_002794.1 + 44105 0.66 0.753049
Target:  5'- uGCGCCgAcGAGCGCCgcauCAGcucGCGGCaGUg -3'
miRNA:   3'- -CGCGGgU-CUCGCGG----GUCu--UGCCGgCG- -5'
10736 3' -61.8 NC_002794.1 + 33100 0.66 0.753049
Target:  5'- --cUCCAcGGCGUgaaCguGAGCGGCCGCg -3'
miRNA:   3'- cgcGGGUcUCGCG---GguCUUGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 69174 0.66 0.753049
Target:  5'- aCGCUCAccGGGCGCugauuCCGGcacGCGGcCCGCa -3'
miRNA:   3'- cGCGGGU--CUCGCG-----GGUCu--UGCC-GGCG- -5'
10736 3' -61.8 NC_002794.1 + 47735 0.66 0.753049
Target:  5'- aGCaGCCCGccGgGUCCAcguGGCGGCCGUg -3'
miRNA:   3'- -CG-CGGGUcuCgCGGGUc--UUGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 102511 0.66 0.753049
Target:  5'- aGCGgCUGGcgcGCGCgCGGGACgaccucuucucgGGCCGCg -3'
miRNA:   3'- -CGCgGGUCu--CGCGgGUCUUG------------CCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 100425 0.66 0.753049
Target:  5'- gGUGCCUGucuuucgauaucGAGUGUCU-GAGCGGCgGCg -3'
miRNA:   3'- -CGCGGGU------------CUCGCGGGuCUUGCCGgCG- -5'
10736 3' -61.8 NC_002794.1 + 50753 0.66 0.753049
Target:  5'- uCGCUCGuc-CGCCCcGGGCGGCgGCg -3'
miRNA:   3'- cGCGGGUcucGCGGGuCUUGCCGgCG- -5'
10736 3' -61.8 NC_002794.1 + 93066 0.66 0.753049
Target:  5'- aCGCCUuccacGAGCGCCUguucccGGGcuGCGGCCu- -3'
miRNA:   3'- cGCGGGu----CUCGCGGG------UCU--UGCCGGcg -5'
10736 3' -61.8 NC_002794.1 + 118523 0.66 0.753049
Target:  5'- cCGCCCGcuGCuGCUCgaGGAGCaGCCGCu -3'
miRNA:   3'- cGCGGGUcuCG-CGGG--UCUUGcCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 184307 0.66 0.753049
Target:  5'- cCGuCCCAGAGCacgGCuCCGcucACGGCCGg -3'
miRNA:   3'- cGC-GGGUCUCG---CG-GGUcu-UGCCGGCg -5'
10736 3' -61.8 NC_002794.1 + 187568 0.66 0.753049
Target:  5'- cGgGCCCGuaccCGCCguCGGcGCGGCCGCc -3'
miRNA:   3'- -CgCGGGUcuc-GCGG--GUCuUGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 19806 0.66 0.753049
Target:  5'- cCGCUCGGAccGCGCgCCGGAcuggaucaaGCuGCUGCa -3'
miRNA:   3'- cGCGGGUCU--CGCG-GGUCU---------UGcCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 190966 0.66 0.752141
Target:  5'- aGCGCCuCGGGGCagcagagcaggcaGCgCGGcGACGGCguCGCg -3'
miRNA:   3'- -CGCGG-GUCUCG-------------CGgGUC-UUGCCG--GCG- -5'
10736 3' -61.8 NC_002794.1 + 145759 0.66 0.752141
Target:  5'- gGCGaCCCcgagcGAGCGCCacgCGGAGucgucccCGGCCGg -3'
miRNA:   3'- -CGC-GGGu----CUCGCGG---GUCUU-------GCCGGCg -5'
10736 3' -61.8 NC_002794.1 + 55787 0.66 0.752141
Target:  5'- gGCGUuggccuCCAGcgagcgcAGCGCCgGGcGCGGgCGCg -3'
miRNA:   3'- -CGCG------GGUC-------UCGCGGgUCuUGCCgGCG- -5'
10736 3' -61.8 NC_002794.1 + 90817 0.66 0.752141
Target:  5'- gGCGUgCGGA-CGCCCaucagucgguacgAGGGCGGCgUGCu -3'
miRNA:   3'- -CGCGgGUCUcGCGGG-------------UCUUGCCG-GCG- -5'
10736 3' -61.8 NC_002794.1 + 29207 0.66 0.743935
Target:  5'- cCGUCCGGcggucGGCGgCCGu--CGGCCGCc -3'
miRNA:   3'- cGCGGGUC-----UCGCgGGUcuuGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 70555 0.66 0.743935
Target:  5'- uGCGCCUcGAGcCGCuCCAGAuCGcucuGCCGa -3'
miRNA:   3'- -CGCGGGuCUC-GCG-GGUCUuGC----CGGCg -5'
10736 3' -61.8 NC_002794.1 + 86179 0.66 0.743935
Target:  5'- aUGCCCcGGGcCGagCCGGGACggaugcuccgGGCCGCg -3'
miRNA:   3'- cGCGGGuCUC-GCg-GGUCUUG----------CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.