miRNA display CGI


Results 1 - 20 of 371 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10736 3' -61.8 NC_002794.1 + 145982 1.12 0.000787
Target:  5'- cGCGCCCAGAGCGCCCAGAACGGCCGCc -3'
miRNA:   3'- -CGCGGGUCUCGCGGGUCUUGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 141439 0.85 0.053859
Target:  5'- gGCGCCgGGGGCGCCgGGAGCGG-CGCg -3'
miRNA:   3'- -CGCGGgUCUCGCGGgUCUUGCCgGCG- -5'
10736 3' -61.8 NC_002794.1 + 112224 0.85 0.061179
Target:  5'- cCGCuCCAGGGCGUCCAGGGCcGCCGCg -3'
miRNA:   3'- cGCG-GGUCUCGCGGGUCUUGcCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 126644 0.84 0.064368
Target:  5'- gGCGCCCGGAcGCGCCgAGAGaccgacgGGCCGCg -3'
miRNA:   3'- -CGCGGGUCU-CGCGGgUCUUg------CCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 66689 0.83 0.072876
Target:  5'- gGCGcCCCAGGcaaagcguacgccGCGCCCGGcACGGCCGCc -3'
miRNA:   3'- -CGC-GGGUCU-------------CGCGGGUCuUGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 145536 0.83 0.076844
Target:  5'- aGCGCCUcGGGCGCCCcGAGCGGCC-Cg -3'
miRNA:   3'- -CGCGGGuCUCGCGGGuCUUGCCGGcG- -5'
10736 3' -61.8 NC_002794.1 + 150584 0.83 0.078805
Target:  5'- cUGCCCucGGGCGCCCgAGGACGGCCGg -3'
miRNA:   3'- cGCGGGu-CUCGCGGG-UCUUGCCGGCg -5'
10736 3' -61.8 NC_002794.1 + 115872 0.81 0.109056
Target:  5'- gGgGUCCGGGGCGUCCGGGGCGuCCGCg -3'
miRNA:   3'- -CgCGGGUCUCGCGGGUCUUGCcGGCG- -5'
10736 3' -61.8 NC_002794.1 + 36892 0.8 0.117447
Target:  5'- cGCGUgCAGAGCGUCCAGA--GGUCGCg -3'
miRNA:   3'- -CGCGgGUCUCGCGGGUCUugCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 82703 0.8 0.117447
Target:  5'- cGCGCCgAGAcGCGCCgAGGACG-CCGCg -3'
miRNA:   3'- -CGCGGgUCU-CGCGGgUCUUGCcGGCG- -5'
10736 3' -61.8 NC_002794.1 + 191050 0.8 0.120376
Target:  5'- uUGCCCGGGGCGCCCAGAcucagacacucGCccGCCGCc -3'
miRNA:   3'- cGCGGGUCUCGCGGGUCU-----------UGc-CGGCG- -5'
10736 3' -61.8 NC_002794.1 + 180876 0.79 0.13606
Target:  5'- gGCGgaUCCGGcGCGCCCGGucuCGGCCGCg -3'
miRNA:   3'- -CGC--GGGUCuCGCGGGUCuu-GCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 83965 0.79 0.146353
Target:  5'- cCGCCUGGAGCGCCU-GGACcGCCGCg -3'
miRNA:   3'- cGCGGGUCUCGCGGGuCUUGcCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 50722 0.78 0.173175
Target:  5'- cGCGUUCGc--CGCCCGGGGCGGCCGCc -3'
miRNA:   3'- -CGCGGGUcucGCGGGUCUUGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 80410 0.77 0.181178
Target:  5'- cGCgGCCCAGguGGCGCCgGGcggggccgccgccGGCGGCCGCc -3'
miRNA:   3'- -CG-CGGGUC--UCGCGGgUC-------------UUGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 187508 0.77 0.18596
Target:  5'- gGCGgCCAGGGCGCCCgcggaGGAACuccccGCCGCc -3'
miRNA:   3'- -CGCgGGUCUCGCGGG-----UCUUGc----CGGCG- -5'
10736 3' -61.8 NC_002794.1 + 72455 0.77 0.19957
Target:  5'- gGCGCCCc--GCGCCCGGccccGCGGCgGCg -3'
miRNA:   3'- -CGCGGGucuCGCGGGUCu---UGCCGgCG- -5'
10736 3' -61.8 NC_002794.1 + 55349 0.76 0.214039
Target:  5'- cGCGCCCGaGGCGgCCGaGGCGGCCGa -3'
miRNA:   3'- -CGCGGGUcUCGCgGGUcUUGCCGGCg -5'
10736 3' -61.8 NC_002794.1 + 17965 0.76 0.224178
Target:  5'- uCGCCCGGgccgugagccuGGCGCCC---ACGGCCGCc -3'
miRNA:   3'- cGCGGGUC-----------UCGCGGGucuUGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 121957 0.76 0.224178
Target:  5'- aGCGCCUGGAGCGCUCcGuGCGGCuCGg -3'
miRNA:   3'- -CGCGGGUCUCGCGGGuCuUGCCG-GCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.