miRNA display CGI


Results 21 - 40 of 371 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10736 3' -61.8 NC_002794.1 + 82358 0.66 0.743935
Target:  5'- aGCGCCCGuccucGcCGCCCGacACcGCCGCg -3'
miRNA:   3'- -CGCGGGUcu---C-GCGGGUcuUGcCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 36180 0.66 0.743935
Target:  5'- cGCGCCCcGGGcCGCCagcauGAcguggcacACGGCCa- -3'
miRNA:   3'- -CGCGGGuCUC-GCGGgu---CU--------UGCCGGcg -5'
10736 3' -61.8 NC_002794.1 + 34317 0.66 0.743935
Target:  5'- uCGaCCCGGgaGGcCGUCCgcaAGGcgACGGCCGCg -3'
miRNA:   3'- cGC-GGGUC--UC-GCGGG---UCU--UGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 191797 0.66 0.743935
Target:  5'- uCGCUC-GAcCGCCCGcu-CGGCCGCu -3'
miRNA:   3'- cGCGGGuCUcGCGGGUcuuGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 48571 0.66 0.743935
Target:  5'- cCGUCCAGAuggGCGagCCGGAggaGCGGCgCGUc -3'
miRNA:   3'- cGCGGGUCU---CGCg-GGUCU---UGCCG-GCG- -5'
10736 3' -61.8 NC_002794.1 + 86179 0.66 0.743935
Target:  5'- aUGCCCcGGGcCGagCCGGGACggaugcuccgGGCCGCg -3'
miRNA:   3'- cGCGGGuCUC-GCg-GGUCUUG----------CCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 70555 0.66 0.743935
Target:  5'- uGCGCCUcGAGcCGCuCCAGAuCGcucuGCCGa -3'
miRNA:   3'- -CGCGGGuCUC-GCG-GGUCUuGC----CGGCg -5'
10736 3' -61.8 NC_002794.1 + 29207 0.66 0.743935
Target:  5'- cCGUCCGGcggucGGCGgCCGu--CGGCCGCc -3'
miRNA:   3'- cGCGGGUC-----UCGCgGGUcuuGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 114864 0.66 0.743935
Target:  5'- cCGCUCc-AGCGCCUcGAGCaGCUGCa -3'
miRNA:   3'- cGCGGGucUCGCGGGuCUUGcCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 69955 0.66 0.743018
Target:  5'- gGUGCCCGGGuugugcgucaCGCCCAGAuacccguggguguACgaGGUCGCg -3'
miRNA:   3'- -CGCGGGUCUc---------GCGGGUCU-------------UG--CCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 48933 0.66 0.743018
Target:  5'- aGCGCCa--GGCGCUCGGcgaccucuucgcaGACGGCgaGCa -3'
miRNA:   3'- -CGCGGgucUCGCGGGUC-------------UUGCCGg-CG- -5'
10736 3' -61.8 NC_002794.1 + 177112 0.66 0.740264
Target:  5'- cCGCCCguuccacgguagcuGGAGUuccuguuGCCCcuGAuuCGGCCGCa -3'
miRNA:   3'- cGCGGG--------------UCUCG-------CGGGu-CUu-GCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 39564 0.66 0.734734
Target:  5'- gGCGCCCuGuaccccGUGCUCAaguacGAGCGgGUCGCg -3'
miRNA:   3'- -CGCGGGuCu-----CGCGGGU-----CUUGC-CGGCG- -5'
10736 3' -61.8 NC_002794.1 + 73025 0.66 0.734734
Target:  5'- cCGCaaCCAGAGCcucGUCCAaGACGGCCu- -3'
miRNA:   3'- cGCG--GGUCUCG---CGGGUcUUGCCGGcg -5'
10736 3' -61.8 NC_002794.1 + 148064 0.66 0.734734
Target:  5'- cGCGCUCuGGGaGCCgGGAGUGGCCu- -3'
miRNA:   3'- -CGCGGGuCUCgCGGgUCUUGCCGGcg -5'
10736 3' -61.8 NC_002794.1 + 187770 0.66 0.734734
Target:  5'- gGCGCC---GGuCGCCUcgaccccggaGGAACGGcCCGCg -3'
miRNA:   3'- -CGCGGgucUC-GCGGG----------UCUUGCC-GGCG- -5'
10736 3' -61.8 NC_002794.1 + 192898 0.66 0.734734
Target:  5'- -aGCgCAGcaCGUCCGcGAACGGUCGCg -3'
miRNA:   3'- cgCGgGUCucGCGGGU-CUUGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 127811 0.66 0.734734
Target:  5'- aCGCCgAgcGAGCGCCCGucguCGGCC-Cg -3'
miRNA:   3'- cGCGGgU--CUCGCGGGUcuu-GCCGGcG- -5'
10736 3' -61.8 NC_002794.1 + 40464 0.66 0.734734
Target:  5'- gGCGCugucCCuucGGGCgGCUCAucGAACGGCCGg -3'
miRNA:   3'- -CGCG----GGu--CUCG-CGGGU--CUUGCCGGCg -5'
10736 3' -61.8 NC_002794.1 + 104733 0.66 0.734734
Target:  5'- uGgGCCCgguGGAGCGCUCgaucucguGGuAGCGGUCGg -3'
miRNA:   3'- -CgCGGG---UCUCGCGGG--------UC-UUGCCGGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.