miRNA display CGI


Results 1 - 20 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10736 3' -61.8 NC_002794.1 + 3 0.71 0.436062
Target:  5'- aGCGCCgAGAcGCGgCCGcGAACacgaaaacgaGGCCGCc -3'
miRNA:   3'- -CGCGGgUCU-CGCgGGU-CUUG----------CCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 147 0.7 0.488567
Target:  5'- cCGCCgcaGGGGCGCaCCAGcACGcCCGCg -3'
miRNA:   3'- cGCGGg--UCUCGCG-GGUCuUGCcGGCG- -5'
10736 3' -61.8 NC_002794.1 + 858 0.71 0.419293
Target:  5'- -gGCCCAGcgcGCGCCCGcGAgGCGGUCGg -3'
miRNA:   3'- cgCGGGUCu--CGCGGGU-CU-UGCCGGCg -5'
10736 3' -61.8 NC_002794.1 + 1254 0.66 0.694363
Target:  5'- cCGCCCGGAggccaguguGCGCCagCcaccggccuucuaaGGAcCGGCCGCu -3'
miRNA:   3'- cGCGGGUCU---------CGCGG--G--------------UCUuGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 2477 0.66 0.743935
Target:  5'- aGCGCgCgAGGGCGaUCCGG--UGGCCGg -3'
miRNA:   3'- -CGCG-GgUCUCGC-GGGUCuuGCCGGCg -5'
10736 3' -61.8 NC_002794.1 + 5076 0.67 0.658916
Target:  5'- aGgGCCC-GAGCGagaCCGGAGggguuuCGGuuGCa -3'
miRNA:   3'- -CgCGGGuCUCGCg--GGUCUU------GCCggCG- -5'
10736 3' -61.8 NC_002794.1 + 7750 0.73 0.356315
Target:  5'- cUGCCCAGccGGCGCcugaagccuccCCAGAACGaGCCGg -3'
miRNA:   3'- cGCGGGUC--UCGCG-----------GGUCUUGC-CGGCg -5'
10736 3' -61.8 NC_002794.1 + 10657 0.67 0.649275
Target:  5'- -aGCCCGacGAGCGUCUGGAGCcGCCu- -3'
miRNA:   3'- cgCGGGU--CUCGCGGGUCUUGcCGGcg -5'
10736 3' -61.8 NC_002794.1 + 12156 0.66 0.734734
Target:  5'- aGCGgCC-GAuCGCCCGGAuCGucGCCGCc -3'
miRNA:   3'- -CGCgGGuCUcGCGGGUCUuGC--CGGCG- -5'
10736 3' -61.8 NC_002794.1 + 12193 0.68 0.629965
Target:  5'- cGCGgCCGG-GCGCCgCucGGACGuGCCGg -3'
miRNA:   3'- -CGCgGGUCuCGCGG-Gu-CUUGC-CGGCg -5'
10736 3' -61.8 NC_002794.1 + 12287 0.71 0.461922
Target:  5'- cGCGCCUGG-GUGUCCGaAACGGgcCCGCg -3'
miRNA:   3'- -CGCGGGUCuCGCGGGUcUUGCC--GGCG- -5'
10736 3' -61.8 NC_002794.1 + 12609 0.66 0.734734
Target:  5'- uGCGCcaCCAGcGCGUCUGG---GGCCGCu -3'
miRNA:   3'- -CGCG--GGUCuCGCGGGUCuugCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 12738 0.69 0.553279
Target:  5'- aGgGCCCGGucCGCUaccaGGAGCuGCCGCu -3'
miRNA:   3'- -CgCGGGUCucGCGGg---UCUUGcCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 13479 0.66 0.725454
Target:  5'- cGCuCCCcccAGCGUCCGcuuGCGGCUGCa -3'
miRNA:   3'- -CGcGGGuc-UCGCGGGUcu-UGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 13771 0.71 0.427629
Target:  5'- cGC-CCCGGAGCcaCCCGGGuggcucCGGCCGUc -3'
miRNA:   3'- -CGcGGGUCUCGc-GGGUCUu-----GCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 13968 0.73 0.320467
Target:  5'- cCGCUCGGAGaCGUUCGcuGCGGCCGCu -3'
miRNA:   3'- cGCGGGUCUC-GCGGGUcuUGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 14180 0.68 0.629965
Target:  5'- uGCGCCUccgAGAcgucaGCGuCCCGGcccGCuGGCCGCc -3'
miRNA:   3'- -CGCGGG---UCU-----CGC-GGGUCu--UG-CCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 14508 0.69 0.57227
Target:  5'- cGCGCUCGcGGCGCUCGuGGCG-CCGCu -3'
miRNA:   3'- -CGCGGGUcUCGCGGGUcUUGCcGGCG- -5'
10736 3' -61.8 NC_002794.1 + 16279 0.74 0.28739
Target:  5'- cGCGCCCcuguuggcGGAGUcuaGCCU--GGCGGCCGCg -3'
miRNA:   3'- -CGCGGG--------UCUCG---CGGGucUUGCCGGCG- -5'
10736 3' -61.8 NC_002794.1 + 16809 0.66 0.697214
Target:  5'- aCGCCCAGc-CGCCCcc-GCcGCCGCa -3'
miRNA:   3'- cGCGGGUCucGCGGGucuUGcCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.