miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10736 5' -58.4 NC_002794.1 + 77911 0.66 0.886749
Target:  5'- cGGCcCCGUucgaCCCGGUCCGC-CGAa-- -3'
miRNA:   3'- uCUGcGGCA----GGGUCAGGCGaGCUaga -5'
10736 5' -58.4 NC_002794.1 + 95570 0.66 0.886749
Target:  5'- aGGACGagCGgCUCuauGUCgGCUCGAUCUa -3'
miRNA:   3'- -UCUGCg-GCaGGGu--CAGgCGAGCUAGA- -5'
10736 5' -58.4 NC_002794.1 + 128956 0.66 0.886749
Target:  5'- -uGCGCCGgaCgAGU-CGCUCGAUCUg -3'
miRNA:   3'- ucUGCGGCagGgUCAgGCGAGCUAGA- -5'
10736 5' -58.4 NC_002794.1 + 71864 0.66 0.886749
Target:  5'- --cCGCCGg-CCAGacUCCGCUCGAcgUCg -3'
miRNA:   3'- ucuGCGGCagGGUC--AGGCGAGCU--AGa -5'
10736 5' -58.4 NC_002794.1 + 41820 0.66 0.886749
Target:  5'- gAGGCGCCcagcaggCCCguGGUCgGgUCGAUCa -3'
miRNA:   3'- -UCUGCGGca-----GGG--UCAGgCgAGCUAGa -5'
10736 5' -58.4 NC_002794.1 + 146358 0.66 0.886087
Target:  5'- cGGCgGCCG-CCCGgguagccGUCCGCUCG-UCc -3'
miRNA:   3'- uCUG-CGGCaGGGU-------CAGGCGAGCuAGa -5'
10736 5' -58.4 NC_002794.1 + 181509 0.66 0.880034
Target:  5'- cGACGCuCGUCCaCGucGUCCGUUCGccCg -3'
miRNA:   3'- uCUGCG-GCAGG-GU--CAGGCGAGCuaGa -5'
10736 5' -58.4 NC_002794.1 + 40462 0.66 0.880034
Target:  5'- cGGGCGCUGUCCCuucgggCgGCUC-AUCg -3'
miRNA:   3'- -UCUGCGGCAGGGuca---GgCGAGcUAGa -5'
10736 5' -58.4 NC_002794.1 + 147278 0.66 0.880034
Target:  5'- cGugGCCGU-CCGG-CUGCaCGAUCa -3'
miRNA:   3'- uCugCGGCAgGGUCaGGCGaGCUAGa -5'
10736 5' -58.4 NC_002794.1 + 188435 0.66 0.879351
Target:  5'- aGGuccuCGUCGUCCCAcGUCUccagcauGUUCGGUCg -3'
miRNA:   3'- -UCu---GCGGCAGGGU-CAGG-------CGAGCUAGa -5'
10736 5' -58.4 NC_002794.1 + 41255 0.66 0.873114
Target:  5'- cGACGCCGgcggCCCGucGUCgCGCUcCGAg-- -3'
miRNA:   3'- uCUGCGGCa---GGGU--CAG-GCGA-GCUaga -5'
10736 5' -58.4 NC_002794.1 + 70335 0.66 0.865994
Target:  5'- aAGACGCCGacggCCGGgcgcCCGCUCG-UCc -3'
miRNA:   3'- -UCUGCGGCag--GGUCa---GGCGAGCuAGa -5'
10736 5' -58.4 NC_002794.1 + 14189 0.66 0.858679
Target:  5'- gAGACGUcagCGUCCCGGcCCGCUgGc--- -3'
miRNA:   3'- -UCUGCG---GCAGGGUCaGGCGAgCuaga -5'
10736 5' -58.4 NC_002794.1 + 111317 0.66 0.858679
Target:  5'- gAGACGCCGggCCAGcggcgcgggCCGCa-GAUCUg -3'
miRNA:   3'- -UCUGCGGCagGGUCa--------GGCGagCUAGA- -5'
10736 5' -58.4 NC_002794.1 + 119934 0.66 0.858679
Target:  5'- cGGCGCCGaUCuCCAG-CCGCgccagcaGGUCg -3'
miRNA:   3'- uCUGCGGC-AG-GGUCaGGCGag-----CUAGa -5'
10736 5' -58.4 NC_002794.1 + 153358 0.66 0.851173
Target:  5'- aGGACGCgG-CCCGG-CUGCgcgcccucguggUCGAUCUg -3'
miRNA:   3'- -UCUGCGgCaGGGUCaGGCG------------AGCUAGA- -5'
10736 5' -58.4 NC_002794.1 + 90423 0.66 0.851173
Target:  5'- ---gGCCGUCCCgAGUggCCGCU-GAUCa -3'
miRNA:   3'- ucugCGGCAGGG-UCA--GGCGAgCUAGa -5'
10736 5' -58.4 NC_002794.1 + 111817 0.66 0.850413
Target:  5'- cAGAUGUCGUCCCAgaaggcgcggaacGUCUGCcCGAg-- -3'
miRNA:   3'- -UCUGCGGCAGGGU-------------CAGGCGaGCUaga -5'
10736 5' -58.4 NC_002794.1 + 63709 0.67 0.843484
Target:  5'- cGGCGCCGgcgcCgCCGGaCCGC-CGAUCc -3'
miRNA:   3'- uCUGCGGCa---G-GGUCaGGCGaGCUAGa -5'
10736 5' -58.4 NC_002794.1 + 114889 0.67 0.843484
Target:  5'- -aGCGuCUG-CUCGGUCCGCUCGAg-- -3'
miRNA:   3'- ucUGC-GGCaGGGUCAGGCGAGCUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.