miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10737 3' -62.3 NC_002794.1 + 66735 0.66 0.652799
Target:  5'- cCGCC-GGCgGUGGCGGCgGCGCgUACGa -3'
miRNA:   3'- -GCGGaCCG-CGUCGUCGaCGCG-GUGUa -5'
10737 3' -62.3 NC_002794.1 + 114360 0.66 0.652799
Target:  5'- cCGCCagGGC-CGGCuGCaGgGCCGCGUa -3'
miRNA:   3'- -GCGGa-CCGcGUCGuCGaCgCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 127092 0.66 0.652799
Target:  5'- cCGgCUGGagaGCGGCGGCU-CGCCGa-- -3'
miRNA:   3'- -GCgGACCg--CGUCGUCGAcGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 113852 0.66 0.652799
Target:  5'- aGCCUGGCGU-GCAGUuccgGCcaggcgcgcucgGCCGCGg -3'
miRNA:   3'- gCGGACCGCGuCGUCGa---CG------------CGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 195215 0.66 0.642914
Target:  5'- cCGCCagcuGCgGCAGCAGCccGCGCgGCGUc -3'
miRNA:   3'- -GCGGac--CG-CGUCGUCGa-CGCGgUGUA- -5'
10737 3' -62.3 NC_002794.1 + 100786 0.66 0.642914
Target:  5'- gCGCCUGcgguuCGCGGCcGCuucUGCGCCuACGUg -3'
miRNA:   3'- -GCGGACc----GCGUCGuCG---ACGCGG-UGUA- -5'
10737 3' -62.3 NC_002794.1 + 91598 0.66 0.642914
Target:  5'- gGCCgcUGGUGCGcGCGGCcgaGgGCCACGc -3'
miRNA:   3'- gCGG--ACCGCGU-CGUCGa--CgCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 58453 0.66 0.642914
Target:  5'- gCGCCUGGcCGCgcuGGC-GCUGCacgacCCGCAg -3'
miRNA:   3'- -GCGGACC-GCG---UCGuCGACGc----GGUGUa -5'
10737 3' -62.3 NC_002794.1 + 103965 0.66 0.642914
Target:  5'- cCGCC-GGCGCuucagacugcgGGCgAGCUuCGCCGCGa -3'
miRNA:   3'- -GCGGaCCGCG-----------UCG-UCGAcGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 61877 0.66 0.642914
Target:  5'- gCGCCgucgucGGCGCcgcGCGGCgaGCGCgGCGa -3'
miRNA:   3'- -GCGGa-----CCGCGu--CGUCGa-CGCGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 192616 0.66 0.642914
Target:  5'- cCGCCaGGUGCGGaCAGUcggGCgGCCGCu- -3'
miRNA:   3'- -GCGGaCCGCGUC-GUCGa--CG-CGGUGua -5'
10737 3' -62.3 NC_002794.1 + 117284 0.66 0.633022
Target:  5'- aCGCCcuGCGCGGaCAGCUGCGgCGu-- -3'
miRNA:   3'- -GCGGacCGCGUC-GUCGACGCgGUgua -5'
10737 3' -62.3 NC_002794.1 + 77984 0.66 0.633022
Target:  5'- cCGCCUcggaacggcgGGCGUuguuccGGCGGCgGCGCCGuCGg -3'
miRNA:   3'- -GCGGA----------CCGCG------UCGUCGaCGCGGU-GUa -5'
10737 3' -62.3 NC_002794.1 + 152423 0.66 0.623129
Target:  5'- uGCCccgGGCcgucuguCGGCAGCUGgGCUACGc -3'
miRNA:   3'- gCGGa--CCGc------GUCGUCGACgCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 129932 0.66 0.623129
Target:  5'- gGCCgUGGCGaCGGCGGCgGCgGCgGCu- -3'
miRNA:   3'- gCGG-ACCGC-GUCGUCGaCG-CGgUGua -5'
10737 3' -62.3 NC_002794.1 + 193816 0.66 0.623129
Target:  5'- uCGUCUGGCGCcgacGCGucGCgGCGCCgGCAc -3'
miRNA:   3'- -GCGGACCGCGu---CGU--CGaCGCGG-UGUa -5'
10737 3' -62.3 NC_002794.1 + 71116 0.66 0.617195
Target:  5'- gGCCggagaGGCGCucguucaucuccgucAGCgGGCUGUGCCGCc- -3'
miRNA:   3'- gCGGa----CCGCG---------------UCG-UCGACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 106970 0.66 0.613242
Target:  5'- uCGCCUcGCGCGGCGGCcgGCaCgGCGg -3'
miRNA:   3'- -GCGGAcCGCGUCGUCGa-CGcGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 93012 0.66 0.613242
Target:  5'- gCGaCgUGGUGCAGCGGCggaacccggUGCGCgGCu- -3'
miRNA:   3'- -GC-GgACCGCGUCGUCG---------ACGCGgUGua -5'
10737 3' -62.3 NC_002794.1 + 150867 0.66 0.613242
Target:  5'- aCGCCUauagccGGCGCAGCGacCUGCuCUACAUc -3'
miRNA:   3'- -GCGGA------CCGCGUCGUc-GACGcGGUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.