Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10737 | 3' | -62.3 | NC_002794.1 | + | 103965 | 0.66 | 0.642914 |
Target: 5'- cCGCC-GGCGCuucagacugcgGGCgAGCUuCGCCGCGa -3' miRNA: 3'- -GCGGaCCGCG-----------UCG-UCGAcGCGGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 58453 | 0.66 | 0.642914 |
Target: 5'- gCGCCUGGcCGCgcuGGC-GCUGCacgacCCGCAg -3' miRNA: 3'- -GCGGACC-GCG---UCGuCGACGc----GGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 91598 | 0.66 | 0.642914 |
Target: 5'- gGCCgcUGGUGCGcGCGGCcgaGgGCCACGc -3' miRNA: 3'- gCGG--ACCGCGU-CGUCGa--CgCGGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 100786 | 0.66 | 0.642914 |
Target: 5'- gCGCCUGcgguuCGCGGCcGCuucUGCGCCuACGUg -3' miRNA: 3'- -GCGGACc----GCGUCGuCG---ACGCGG-UGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 195215 | 0.66 | 0.642914 |
Target: 5'- cCGCCagcuGCgGCAGCAGCccGCGCgGCGUc -3' miRNA: 3'- -GCGGac--CG-CGUCGUCGa-CGCGgUGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 117284 | 0.66 | 0.633022 |
Target: 5'- aCGCCcuGCGCGGaCAGCUGCGgCGu-- -3' miRNA: 3'- -GCGGacCGCGUC-GUCGACGCgGUgua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 138984 | 0.67 | 0.579766 |
Target: 5'- gGCCUGGCgggccugcgcgaagGCuuuGCGGCUGaagagcuCGCCGCGg -3' miRNA: 3'- gCGGACCG--------------CGu--CGUCGAC-------GCGGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 145711 | 0.67 | 0.577807 |
Target: 5'- gGCCgaaaacggggaucgGGCGCuggaGGCGGCgGCGCCgGCAUc -3' miRNA: 3'- gCGGa-------------CCGCG----UCGUCGaCGCGG-UGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 66849 | 0.67 | 0.568035 |
Target: 5'- cCGCCgucGGCGCGGCgaggccgcggcgugcGGCUGaGCCAUc- -3' miRNA: 3'- -GCGGa--CCGCGUCG---------------UCGACgCGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 59167 | 0.67 | 0.573894 |
Target: 5'- aCGCugCUGGCGCAGCuGCUGgacccCGUgGCGg -3' miRNA: 3'- -GCG--GACCGCGUCGuCGAC-----GCGgUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 191659 | 0.67 | 0.564138 |
Target: 5'- cCGCCgggggacGGCGcCGGCAGCgGCgGCgGCGUg -3' miRNA: 3'- -GCGGa------CCGC-GUCGUCGaCG-CGgUGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 23948 | 0.67 | 0.568035 |
Target: 5'- gGCCgcGGCGCacuuggcuccgagccAGCGGCgaggccgGCGCCACc- -3' miRNA: 3'- gCGGa-CCGCG---------------UCGUCGa------CGCGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 106073 | 0.67 | 0.583688 |
Target: 5'- cCGCC-GGCacGCGGCuuuuCUGCGCUACGUc -3' miRNA: 3'- -GCGGaCCG--CGUCGuc--GACGCGGUGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 131027 | 0.67 | 0.583688 |
Target: 5'- gGUCgugcGGCGCGGcCGGCUGcCGCCGa-- -3' miRNA: 3'- gCGGa---CCGCGUC-GUCGAC-GCGGUgua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 128151 | 0.67 | 0.593515 |
Target: 5'- aGCgacGCGaCGGCGGCUcGCGCCGCGg -3' miRNA: 3'- gCGgacCGC-GUCGUCGA-CGCGGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 118266 | 0.67 | 0.593515 |
Target: 5'- gGCC-GGgGCGGCGGCgccgGCGUCGgGg -3' miRNA: 3'- gCGGaCCgCGUCGUCGa---CGCGGUgUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 59340 | 0.67 | 0.593515 |
Target: 5'- cCGCCaccacGCGCucuacaacGGCuGCUGCGCCACc- -3' miRNA: 3'- -GCGGac---CGCG--------UCGuCGACGCGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 67420 | 0.67 | 0.593515 |
Target: 5'- gCGCCa-GCGuCGGCGGCgugucGCGCCGCu- -3' miRNA: 3'- -GCGGacCGC-GUCGUCGa----CGCGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 79431 | 0.67 | 0.593515 |
Target: 5'- gGCCcGGCgGCGGCGGCgGCGaCCGg-- -3' miRNA: 3'- gCGGaCCG-CGUCGUCGaCGC-GGUgua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 90082 | 0.67 | 0.564138 |
Target: 5'- gGCCgaugUGGCuCGGCAcGCucUGCGCCGCGg -3' miRNA: 3'- gCGG----ACCGcGUCGU-CG--ACGCGGUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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