miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10737 3' -62.3 NC_002794.1 + 188776 0.68 0.525612
Target:  5'- aGCCcGGUGCAGCGGUaGCgGCCGg-- -3'
miRNA:   3'- gCGGaCCGCGUCGUCGaCG-CGGUgua -5'
10737 3' -62.3 NC_002794.1 + 111042 0.68 0.535158
Target:  5'- cCGgCUGGCGguGCAGCUcgGUCACu- -3'
miRNA:   3'- -GCgGACCGCguCGUCGAcgCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 62683 0.68 0.535158
Target:  5'- cCGCCUGcG-GguGCAGCUGUGUCgGCGg -3'
miRNA:   3'- -GCGGAC-CgCguCGUCGACGCGG-UGUa -5'
10737 3' -62.3 NC_002794.1 + 125826 0.68 0.535158
Target:  5'- gCGuCCUcGGCGCccuGCuGCUGCGCUGCc- -3'
miRNA:   3'- -GC-GGA-CCGCGu--CGuCGACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 58361 0.68 0.534201
Target:  5'- gGCCUGGCGCcGCccgacuuccaggaGGCgcgcggGCGCCAg-- -3'
miRNA:   3'- gCGGACCGCGuCG-------------UCGa-----CGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 124532 0.68 0.532288
Target:  5'- cCGCCgacgcUGGCGCuGCGGCUGaagccguacaaggcCGCCAUc- -3'
miRNA:   3'- -GCGG-----ACCGCGuCGUCGAC--------------GCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 34155 0.68 0.535158
Target:  5'- uGCCUGGaGgAGCAGgUGCaGUCGCAg -3'
miRNA:   3'- gCGGACCgCgUCGUCgACG-CGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 136413 0.68 0.532288
Target:  5'- gCGCUgaacGGCgguccauaaccggaGCGGCGGCUGCGuCCGCu- -3'
miRNA:   3'- -GCGGa---CCG--------------CGUCGUCGACGC-GGUGua -5'
10737 3' -62.3 NC_002794.1 + 91225 0.68 0.525612
Target:  5'- aCGgCggacGGCGCGGCggccgucgGGCUGCGCuCGCGg -3'
miRNA:   3'- -GCgGa---CCGCGUCG--------UCGACGCG-GUGUa -5'
10737 3' -62.3 NC_002794.1 + 12216 0.68 0.525612
Target:  5'- uGCCggcGGCGuCGGCGGCgccggcgGCGCCGu-- -3'
miRNA:   3'- gCGGa--CCGC-GUCGUCGa------CGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 99143 0.69 0.451939
Target:  5'- -aCCUGGCGCAGCAGacccaGCGgCACc- -3'
miRNA:   3'- gcGGACCGCGUCGUCga---CGCgGUGua -5'
10737 3' -62.3 NC_002794.1 + 104527 0.69 0.451939
Target:  5'- gCGCgggUGGCGCGGgaagAGCUGCGCCAgCGUc -3'
miRNA:   3'- -GCGg--ACCGCGUCg---UCGACGCGGU-GUA- -5'
10737 3' -62.3 NC_002794.1 + 107210 0.69 0.451939
Target:  5'- uCGCCcGGCGCcgccgGGCGGC-GCGCgACGg -3'
miRNA:   3'- -GCGGaCCGCG-----UCGUCGaCGCGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 34840 0.69 0.451939
Target:  5'- gCGCCggagcgGGCGUcGgAGCggGCGCCGCGg -3'
miRNA:   3'- -GCGGa-----CCGCGuCgUCGa-CGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 57132 0.69 0.455492
Target:  5'- gGCCUGGUGCAcaacuuccugcucacGCuGCUGCgcaaggcgccGCCGCAc -3'
miRNA:   3'- gCGGACCGCGU---------------CGuCGACG----------CGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 122989 0.69 0.46444
Target:  5'- gCGCCUGGUGCGGgccgugcugacgggcCGGCUG-GCCGuCGUg -3'
miRNA:   3'- -GCGGACCGCGUC---------------GUCGACgCGGU-GUA- -5'
10737 3' -62.3 NC_002794.1 + 184572 0.69 0.46085
Target:  5'- gCGCCgc-CGCGGCGGCgGCGgCCACGc -3'
miRNA:   3'- -GCGGaccGCGUCGUCGaCGC-GGUGUa -5'
10737 3' -62.3 NC_002794.1 + 114137 0.69 0.469853
Target:  5'- cCGCCggccagGGCGC-GCAG--GCGCCGCGUc -3'
miRNA:   3'- -GCGGa-----CCGCGuCGUCgaCGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 101522 0.69 0.469853
Target:  5'- aCGCC-GGCG-GGguGCccgGCGCCACGUu -3'
miRNA:   3'- -GCGGaCCGCgUCguCGa--CGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 52649 0.69 0.451939
Target:  5'- aGCCgGaGCgGCGGCAGgcuCUGCGCCACc- -3'
miRNA:   3'- gCGGaC-CG-CGUCGUC---GACGCGGUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.