miRNA display CGI


Results 81 - 100 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10737 3' -62.3 NC_002794.1 + 104527 0.69 0.451939
Target:  5'- gCGCgggUGGCGCGGgaagAGCUGCGCCAgCGUc -3'
miRNA:   3'- -GCGg--ACCGCGUCg---UCGACGCGGU-GUA- -5'
10737 3' -62.3 NC_002794.1 + 190363 0.69 0.469853
Target:  5'- gGCCgcgcGGCGCAGCGGgUGCucCCGCu- -3'
miRNA:   3'- gCGGa---CCGCGUCGUCgACGc-GGUGua -5'
10737 3' -62.3 NC_002794.1 + 101522 0.69 0.469853
Target:  5'- aCGCC-GGCG-GGguGCccgGCGCCACGUu -3'
miRNA:   3'- -GCGGaCCGCgUCguCGa--CGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 114137 0.69 0.469853
Target:  5'- cCGCCggccagGGCGC-GCAG--GCGCCGCGUc -3'
miRNA:   3'- -GCGGa-----CCGCGuCGUCgaCGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 184572 0.69 0.46085
Target:  5'- gCGCCgc-CGCGGCGGCgGCGgCCACGc -3'
miRNA:   3'- -GCGGaccGCGUCGUCGaCGC-GGUGUa -5'
10737 3' -62.3 NC_002794.1 + 122989 0.69 0.46444
Target:  5'- gCGCCUGGUGCGGgccgugcugacgggcCGGCUG-GCCGuCGUg -3'
miRNA:   3'- -GCGGACCGCGUC---------------GUCGACgCGGU-GUA- -5'
10737 3' -62.3 NC_002794.1 + 57132 0.69 0.455492
Target:  5'- gGCCUGGUGCAcaacuuccugcucacGCuGCUGCgcaaggcgccGCCGCAc -3'
miRNA:   3'- gCGGACCGCGU---------------CGuCGACG----------CGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 34840 0.69 0.451939
Target:  5'- gCGCCggagcgGGCGUcGgAGCggGCGCCGCGg -3'
miRNA:   3'- -GCGGa-----CCGCGuCgUCGa-CGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 107210 0.69 0.451939
Target:  5'- uCGCCcGGCGCcgccgGGCGGC-GCGCgACGg -3'
miRNA:   3'- -GCGGaCCGCG-----UCGUCGaCGCGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 34226 0.7 0.376298
Target:  5'- gCGCaaGGUGCAggagcugcacgcGCGGCUGCcGCCGCAg -3'
miRNA:   3'- -GCGgaCCGCGU------------CGUCGACG-CGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 70659 0.7 0.392359
Target:  5'- gGCCUcGuGCGCGGCGGC--CGCCGCGg -3'
miRNA:   3'- gCGGA-C-CGCGUCGUCGacGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 102499 0.7 0.392359
Target:  5'- aCGuCCUGuuGCAGCGGCUGgCGCgCGCGc -3'
miRNA:   3'- -GC-GGACcgCGUCGUCGAC-GCG-GUGUa -5'
10737 3' -62.3 NC_002794.1 + 123236 0.7 0.400555
Target:  5'- gGCCUGGC-CAuCAGcCUGUGCCACu- -3'
miRNA:   3'- gCGGACCGcGUcGUC-GACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 99587 0.7 0.40886
Target:  5'- uGCggagGGCGCGGCGGCgGCGCgCGCu- -3'
miRNA:   3'- gCGga--CCGCGUCGUCGaCGCG-GUGua -5'
10737 3' -62.3 NC_002794.1 + 152108 0.7 0.41727
Target:  5'- cCGUCUGGgGCuu--GCUGCGCCGCu- -3'
miRNA:   3'- -GCGGACCgCGucguCGACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 130462 0.7 0.41727
Target:  5'- gGCgaGGCGCuGGCGGCuugcgUGCGCgACAUg -3'
miRNA:   3'- gCGgaCCGCG-UCGUCG-----ACGCGgUGUA- -5'
10737 3' -62.3 NC_002794.1 + 33535 0.7 0.41727
Target:  5'- gGCCUGGCcaccCAGCuGgUGCGCCAgAa -3'
miRNA:   3'- gCGGACCGc---GUCGuCgACGCGGUgUa -5'
10737 3' -62.3 NC_002794.1 + 182196 0.7 0.41727
Target:  5'- gGCCUcGGCGcCGGC-GUcGCGCCACGg -3'
miRNA:   3'- gCGGA-CCGC-GUCGuCGaCGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 117702 0.7 0.41727
Target:  5'- aCGCCgcgacGGCGUGGCAGCUccGCGucugcuCCACGUa -3'
miRNA:   3'- -GCGGa----CCGCGUCGUCGA--CGC------GGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 111320 0.71 0.338129
Target:  5'- aCGCCgGGC-CAGCGGCgcGgGCCGCAg -3'
miRNA:   3'- -GCGGaCCGcGUCGUCGa-CgCGGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.