Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10737 | 3' | -62.3 | NC_002794.1 | + | 145005 | 1.06 | 0.001271 |
Target: 5'- cCGCCUGGCGCAGCAGCUGCGCCACAUg -3' miRNA: 3'- -GCGGACCGCGUCGUCGACGCGGUGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 186275 | 0.79 | 0.104597 |
Target: 5'- cCGCCUGGCGCGGCGGCaccGCgGCCAgGc -3' miRNA: 3'- -GCGGACCGCGUCGUCGa--CG-CGGUgUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 126304 | 0.77 | 0.148703 |
Target: 5'- gCGCCUGGCGguGCAGCggaGCGUgACc- -3' miRNA: 3'- -GCGGACCGCguCGUCGa--CGCGgUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 194316 | 0.77 | 0.148703 |
Target: 5'- gCGCCUGcCGCAGCGGaucGCGCCACGg -3' miRNA: 3'- -GCGGACcGCGUCGUCga-CGCGGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 126391 | 0.76 | 0.180976 |
Target: 5'- gGCCU-GCGCGGCGGCgUGCGCgGCGg -3' miRNA: 3'- gCGGAcCGCGUCGUCG-ACGCGgUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 101804 | 0.76 | 0.180976 |
Target: 5'- cCGCUgguUGGCGCAGCGGC-GCGCCGu-- -3' miRNA: 3'- -GCGG---ACCGCGUCGUCGaCGCGGUgua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 149277 | 0.75 | 0.185421 |
Target: 5'- cCGCCggcGGCGCGGCGGCU-CGCuCACGg -3' miRNA: 3'- -GCGGa--CCGCGUCGUCGAcGCG-GUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 115922 | 0.73 | 0.276723 |
Target: 5'- gGaCUUGGCGCGGCGGCgggccgGCccGCCGCGUg -3' miRNA: 3'- gC-GGACCGCGUCGUCGa-----CG--CGGUGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 114187 | 0.73 | 0.264348 |
Target: 5'- gGCCaGGCGCAGCg---GCGCCACGg -3' miRNA: 3'- gCGGaCCGCGUCGucgaCGCGGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 111639 | 0.73 | 0.276723 |
Target: 5'- cCGCCggucgGGCGCcGCGGCcGCGgCCACGc -3' miRNA: 3'- -GCGGa----CCGCGuCGUCGaCGC-GGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 187069 | 0.73 | 0.276723 |
Target: 5'- cCGCCaGGUGCcGCAgGCUGCucGCCACGUg -3' miRNA: 3'- -GCGGaCCGCGuCGU-CGACG--CGGUGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 71350 | 0.72 | 0.296147 |
Target: 5'- cCGCCaggcGGCGCAGCAGgUGCggcaGCCGCc- -3' miRNA: 3'- -GCGGa---CCGCGUCGUCgACG----CGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 194633 | 0.72 | 0.326524 |
Target: 5'- aCGCCUGGUccaccaccagcaccuGCGuCGGCUGCGCCGgGUc -3' miRNA: 3'- -GCGGACCG---------------CGUcGUCGACGCGGUgUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 182528 | 0.72 | 0.309675 |
Target: 5'- cCGUCcaccaGCGCGGCAGCgacUGCGCCGCGg -3' miRNA: 3'- -GCGGac---CGCGUCGUCG---ACGCGGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 21701 | 0.72 | 0.296147 |
Target: 5'- cCGCCUcGGCGUccacgGGC-GCUGCGUCGCGa -3' miRNA: 3'- -GCGGA-CCGCG-----UCGuCGACGCGGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 124381 | 0.72 | 0.302853 |
Target: 5'- uCGCCUcGGuCGCGGCGGC-GCGUCGCc- -3' miRNA: 3'- -GCGGA-CC-GCGUCGUCGaCGCGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 71301 | 0.72 | 0.323669 |
Target: 5'- cCGCC-GGCGCgcucgGGCGGCgagcGCGCCACc- -3' miRNA: 3'- -GCGGaCCGCG-----UCGUCGa---CGCGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 108982 | 0.72 | 0.289557 |
Target: 5'- aGCgUGGCGaAGCuGCUGCGCCuCGUg -3' miRNA: 3'- gCGgACCGCgUCGuCGACGCGGuGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 111320 | 0.71 | 0.338129 |
Target: 5'- aCGCCgGGC-CAGCGGCgcGgGCCGCAg -3' miRNA: 3'- -GCGGaCCGcGUCGUCGa-CgCGGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 53531 | 0.71 | 0.360687 |
Target: 5'- aGCCgugGGCGCGGCGGCcGCacaGCC-CGUg -3' miRNA: 3'- gCGGa--CCGCGUCGUCGaCG---CGGuGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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