Results 61 - 80 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10737 | 3' | -62.3 | NC_002794.1 | + | 59657 | 0.68 | 0.497382 |
Target: 5'- uCGCCacGGCGCuGCAGagccgcCUGCGCCuGCAc -3' miRNA: 3'- -GCGGa-CCGCGuCGUC------GACGCGG-UGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 104898 | 0.68 | 0.515187 |
Target: 5'- cCGCgaGGCGCcguGCuGCUcgagcagGCGCCGCGUc -3' miRNA: 3'- -GCGgaCCGCGu--CGuCGA-------CGCGGUGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 116128 | 0.68 | 0.50672 |
Target: 5'- cCGCCgcGGCgGCGGCGGCgGCgGCCAgGg -3' miRNA: 3'- -GCGGa-CCG-CGUCGUCGaCG-CGGUgUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 62683 | 0.68 | 0.535158 |
Target: 5'- cCGCCUGcG-GguGCAGCUGUGUCgGCGg -3' miRNA: 3'- -GCGGAC-CgCguCGUCGACGCGG-UGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 125826 | 0.68 | 0.535158 |
Target: 5'- gCGuCCUcGGCGCccuGCuGCUGCGCUGCc- -3' miRNA: 3'- -GC-GGA-CCGCGu--CGuCGACGCGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 58361 | 0.68 | 0.534201 |
Target: 5'- gGCCUGGCGCcGCccgacuuccaggaGGCgcgcggGCGCCAg-- -3' miRNA: 3'- gCGGACCGCGuCG-------------UCGa-----CGCGGUgua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 124532 | 0.68 | 0.532288 |
Target: 5'- cCGCCgacgcUGGCGCuGCGGCUGaagccguacaaggcCGCCAUc- -3' miRNA: 3'- -GCGG-----ACCGCGuCGUCGAC--------------GCGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 34155 | 0.68 | 0.535158 |
Target: 5'- uGCCUGGaGgAGCAGgUGCaGUCGCAg -3' miRNA: 3'- gCGGACCgCgUCGUCgACG-CGGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 136413 | 0.68 | 0.532288 |
Target: 5'- gCGCUgaacGGCgguccauaaccggaGCGGCGGCUGCGuCCGCu- -3' miRNA: 3'- -GCGGa---CCG--------------CGUCGUCGACGC-GGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 91225 | 0.68 | 0.525612 |
Target: 5'- aCGgCggacGGCGCGGCggccgucgGGCUGCGCuCGCGg -3' miRNA: 3'- -GCgGa---CCGCGUCG--------UCGACGCG-GUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 12216 | 0.68 | 0.525612 |
Target: 5'- uGCCggcGGCGuCGGCGGCgccggcgGCGCCGu-- -3' miRNA: 3'- gCGGa--CCGC-GUCGUCGa------CGCGGUgua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 188776 | 0.68 | 0.525612 |
Target: 5'- aGCCcGGUGCAGCGGUaGCgGCCGg-- -3' miRNA: 3'- gCGGaCCGCGUCGUCGaCG-CGGUgua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 32298 | 0.68 | 0.516131 |
Target: 5'- cCGCCgc-CGCGGCGGCcGCGCCGg-- -3' miRNA: 3'- -GCGGaccGCGUCGUCGaCGCGGUgua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 111042 | 0.68 | 0.535158 |
Target: 5'- cCGgCUGGCGguGCAGCUcgGUCACu- -3' miRNA: 3'- -GCgGACCGCguCGUCGAcgCGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 59340 | 0.67 | 0.593515 |
Target: 5'- cCGCCaccacGCGCucuacaacGGCuGCUGCGCCACc- -3' miRNA: 3'- -GCGGac---CGCG--------UCGuCGACGCGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 67420 | 0.67 | 0.593515 |
Target: 5'- gCGCCa-GCGuCGGCGGCgugucGCGCCGCu- -3' miRNA: 3'- -GCGGacCGC-GUCGUCGa----CGCGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 190967 | 0.67 | 0.544765 |
Target: 5'- gCGCCUcGGgGCAGCAGagcaggcaGCGCgGCGa -3' miRNA: 3'- -GCGGA-CCgCGUCGUCga------CGCGgUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 192028 | 0.67 | 0.543802 |
Target: 5'- uGCUguuucugUGGCgGCGGCGGCUGCuGCUGCu- -3' miRNA: 3'- gCGG-------ACCG-CGUCGUCGACG-CGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 126070 | 0.67 | 0.593515 |
Target: 5'- gCGCCUGGCcuggaccggccuGCGGCcgaccgacuGGCUuccggcccuggGCGCCGCGc -3' miRNA: 3'- -GCGGACCG------------CGUCG---------UCGA-----------CGCGGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 118266 | 0.67 | 0.593515 |
Target: 5'- gGCC-GGgGCGGCGGCgccgGCGUCGgGg -3' miRNA: 3'- gCGGaCCgCGUCGUCGa---CGCGGUgUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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