miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10737 3' -62.3 NC_002794.1 + 145005 1.06 0.001271
Target:  5'- cCGCCUGGCGCAGCAGCUGCGCCACAUg -3'
miRNA:   3'- -GCGGACCGCGUCGUCGACGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 186275 0.79 0.104597
Target:  5'- cCGCCUGGCGCGGCGGCaccGCgGCCAgGc -3'
miRNA:   3'- -GCGGACCGCGUCGUCGa--CG-CGGUgUa -5'
10737 3' -62.3 NC_002794.1 + 194316 0.77 0.148703
Target:  5'- gCGCCUGcCGCAGCGGaucGCGCCACGg -3'
miRNA:   3'- -GCGGACcGCGUCGUCga-CGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 126304 0.77 0.148703
Target:  5'- gCGCCUGGCGguGCAGCggaGCGUgACc- -3'
miRNA:   3'- -GCGGACCGCguCGUCGa--CGCGgUGua -5'
10737 3' -62.3 NC_002794.1 + 101804 0.76 0.180976
Target:  5'- cCGCUgguUGGCGCAGCGGC-GCGCCGu-- -3'
miRNA:   3'- -GCGG---ACCGCGUCGUCGaCGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 126391 0.76 0.180976
Target:  5'- gGCCU-GCGCGGCGGCgUGCGCgGCGg -3'
miRNA:   3'- gCGGAcCGCGUCGUCG-ACGCGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 149277 0.75 0.185421
Target:  5'- cCGCCggcGGCGCGGCGGCU-CGCuCACGg -3'
miRNA:   3'- -GCGGa--CCGCGUCGUCGAcGCG-GUGUa -5'
10737 3' -62.3 NC_002794.1 + 114187 0.73 0.264348
Target:  5'- gGCCaGGCGCAGCg---GCGCCACGg -3'
miRNA:   3'- gCGGaCCGCGUCGucgaCGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 115922 0.73 0.276723
Target:  5'- gGaCUUGGCGCGGCGGCgggccgGCccGCCGCGUg -3'
miRNA:   3'- gC-GGACCGCGUCGUCGa-----CG--CGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 187069 0.73 0.276723
Target:  5'- cCGCCaGGUGCcGCAgGCUGCucGCCACGUg -3'
miRNA:   3'- -GCGGaCCGCGuCGU-CGACG--CGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 111639 0.73 0.276723
Target:  5'- cCGCCggucgGGCGCcGCGGCcGCGgCCACGc -3'
miRNA:   3'- -GCGGa----CCGCGuCGUCGaCGC-GGUGUa -5'
10737 3' -62.3 NC_002794.1 + 108982 0.72 0.289557
Target:  5'- aGCgUGGCGaAGCuGCUGCGCCuCGUg -3'
miRNA:   3'- gCGgACCGCgUCGuCGACGCGGuGUA- -5'
10737 3' -62.3 NC_002794.1 + 21701 0.72 0.296147
Target:  5'- cCGCCUcGGCGUccacgGGC-GCUGCGUCGCGa -3'
miRNA:   3'- -GCGGA-CCGCG-----UCGuCGACGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 71350 0.72 0.296147
Target:  5'- cCGCCaggcGGCGCAGCAGgUGCggcaGCCGCc- -3'
miRNA:   3'- -GCGGa---CCGCGUCGUCgACG----CGGUGua -5'
10737 3' -62.3 NC_002794.1 + 124381 0.72 0.302853
Target:  5'- uCGCCUcGGuCGCGGCGGC-GCGUCGCc- -3'
miRNA:   3'- -GCGGA-CC-GCGUCGUCGaCGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 182528 0.72 0.309675
Target:  5'- cCGUCcaccaGCGCGGCAGCgacUGCGCCGCGg -3'
miRNA:   3'- -GCGGac---CGCGUCGUCG---ACGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 71301 0.72 0.323669
Target:  5'- cCGCC-GGCGCgcucgGGCGGCgagcGCGCCACc- -3'
miRNA:   3'- -GCGGaCCGCG-----UCGUCGa---CGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 194633 0.72 0.326524
Target:  5'- aCGCCUGGUccaccaccagcaccuGCGuCGGCUGCGCCGgGUc -3'
miRNA:   3'- -GCGGACCG---------------CGUcGUCGACGCGGUgUA- -5'
10737 3' -62.3 NC_002794.1 + 57228 0.71 0.330841
Target:  5'- aGCCUGacGCGCGuGCAGC-GCGCCAaCAUc -3'
miRNA:   3'- gCGGAC--CGCGU-CGUCGaCGCGGU-GUA- -5'
10737 3' -62.3 NC_002794.1 + 111320 0.71 0.338129
Target:  5'- aCGCCgGGC-CAGCGGCgcGgGCCGCAg -3'
miRNA:   3'- -GCGGaCCGcGUCGUCGa-CgCGGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.