miRNA display CGI


Results 21 - 40 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10737 3' -62.3 NC_002794.1 + 93709 0.71 0.353052
Target:  5'- gCGCCUGGuCGaccuGCuGUUGCGCCGCu- -3'
miRNA:   3'- -GCGGACC-GCgu--CGuCGACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 156403 0.71 0.353052
Target:  5'- gGCC-GGCGCcGCGGCcGCGgCCACGg -3'
miRNA:   3'- gCGGaCCGCGuCGUCGaCGC-GGUGUa -5'
10737 3' -62.3 NC_002794.1 + 53531 0.71 0.360687
Target:  5'- aGCCgugGGCGCGGCGGCcGCacaGCC-CGUg -3'
miRNA:   3'- gCGGa--CCGCGUCGUCGaCG---CGGuGUA- -5'
10737 3' -62.3 NC_002794.1 + 137606 0.71 0.360687
Target:  5'- cCGCCggcGGuCGCGGCGGCgGUGcCCACGa -3'
miRNA:   3'- -GCGGa--CC-GCGUCGUCGaCGC-GGUGUa -5'
10737 3' -62.3 NC_002794.1 + 34226 0.7 0.376298
Target:  5'- gCGCaaGGUGCAggagcugcacgcGCGGCUGCcGCCGCAg -3'
miRNA:   3'- -GCGgaCCGCGU------------CGUCGACG-CGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 102499 0.7 0.392359
Target:  5'- aCGuCCUGuuGCAGCGGCUGgCGCgCGCGc -3'
miRNA:   3'- -GC-GGACcgCGUCGUCGAC-GCG-GUGUa -5'
10737 3' -62.3 NC_002794.1 + 70659 0.7 0.392359
Target:  5'- gGCCUcGuGCGCGGCGGC--CGCCGCGg -3'
miRNA:   3'- gCGGA-C-CGCGUCGUCGacGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 123236 0.7 0.400555
Target:  5'- gGCCUGGC-CAuCAGcCUGUGCCACu- -3'
miRNA:   3'- gCGGACCGcGUcGUC-GACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 99587 0.7 0.40886
Target:  5'- uGCggagGGCGCGGCGGCgGCGCgCGCu- -3'
miRNA:   3'- gCGga--CCGCGUCGUCGaCGCG-GUGua -5'
10737 3' -62.3 NC_002794.1 + 117702 0.7 0.41727
Target:  5'- aCGCCgcgacGGCGUGGCAGCUccGCGucugcuCCACGUa -3'
miRNA:   3'- -GCGGa----CCGCGUCGUCGA--CGC------GGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 130462 0.7 0.41727
Target:  5'- gGCgaGGCGCuGGCGGCuugcgUGCGCgACAUg -3'
miRNA:   3'- gCGgaCCGCG-UCGUCG-----ACGCGgUGUA- -5'
10737 3' -62.3 NC_002794.1 + 33535 0.7 0.41727
Target:  5'- gGCCUGGCcaccCAGCuGgUGCGCCAgAa -3'
miRNA:   3'- gCGGACCGc---GUCGuCgACGCGGUgUa -5'
10737 3' -62.3 NC_002794.1 + 182196 0.7 0.41727
Target:  5'- gGCCUcGGCGcCGGC-GUcGCGCCACGg -3'
miRNA:   3'- gCGGA-CCGC-GUCGuCGaCGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 152108 0.7 0.41727
Target:  5'- cCGUCUGGgGCuu--GCUGCGCCGCu- -3'
miRNA:   3'- -GCGGACCgCGucguCGACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 141440 0.69 0.425786
Target:  5'- gCGCCgggGGCGcCGGgAGCgGCGCgGCGUc -3'
miRNA:   3'- -GCGGa--CCGC-GUCgUCGaCGCGgUGUA- -5'
10737 3' -62.3 NC_002794.1 + 148514 0.69 0.434404
Target:  5'- uCGaCUGGa--AGCGGCUGCGCCGCu- -3'
miRNA:   3'- -GCgGACCgcgUCGUCGACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 106665 0.69 0.434404
Target:  5'- gGCCgGGCGguGUcGCUGUGCUGCu- -3'
miRNA:   3'- gCGGaCCGCguCGuCGACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 41890 0.69 0.434404
Target:  5'- aCGCCacguaGCGCuccAGCAGC-GCGCCACGa -3'
miRNA:   3'- -GCGGac---CGCG---UCGUCGaCGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 183697 0.69 0.434404
Target:  5'- cCGCC-GcGCGCGGCGGCacaGCCACAc -3'
miRNA:   3'- -GCGGaC-CGCGUCGUCGacgCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 50567 0.69 0.443123
Target:  5'- aGCCUGucgacacggcguGCGCGGCGGCUggguggccgGCGCCGgGg -3'
miRNA:   3'- gCGGAC------------CGCGUCGUCGA---------CGCGGUgUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.