miRNA display CGI


Results 41 - 60 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10737 3' -62.3 NC_002794.1 + 185195 0.69 0.443123
Target:  5'- gGUC-GGCGCGgucaucGCGGCUcGCGCCGCGg -3'
miRNA:   3'- gCGGaCCGCGU------CGUCGA-CGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 50567 0.69 0.443123
Target:  5'- aGCCUGucgacacggcguGCGCGGCGGCUggguggccgGCGCCGgGg -3'
miRNA:   3'- gCGGAC------------CGCGUCGUCGA---------CGCGGUgUa -5'
10737 3' -62.3 NC_002794.1 + 52649 0.69 0.451939
Target:  5'- aGCCgGaGCgGCGGCAGgcuCUGCGCCACc- -3'
miRNA:   3'- gCGGaC-CG-CGUCGUC---GACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 99143 0.69 0.451939
Target:  5'- -aCCUGGCGCAGCAGacccaGCGgCACc- -3'
miRNA:   3'- gcGGACCGCGUCGUCga---CGCgGUGua -5'
10737 3' -62.3 NC_002794.1 + 107210 0.69 0.451939
Target:  5'- uCGCCcGGCGCcgccgGGCGGC-GCGCgACGg -3'
miRNA:   3'- -GCGGaCCGCG-----UCGUCGaCGCGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 104527 0.69 0.451939
Target:  5'- gCGCgggUGGCGCGGgaagAGCUGCGCCAgCGUc -3'
miRNA:   3'- -GCGg--ACCGCGUCg---UCGACGCGGU-GUA- -5'
10737 3' -62.3 NC_002794.1 + 34840 0.69 0.451939
Target:  5'- gCGCCggagcgGGCGUcGgAGCggGCGCCGCGg -3'
miRNA:   3'- -GCGGa-----CCGCGuCgUCGa-CGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 57132 0.69 0.455492
Target:  5'- gGCCUGGUGCAcaacuuccugcucacGCuGCUGCgcaaggcgccGCCGCAc -3'
miRNA:   3'- gCGGACCGCGU---------------CGuCGACG----------CGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 184572 0.69 0.46085
Target:  5'- gCGCCgc-CGCGGCGGCgGCGgCCACGc -3'
miRNA:   3'- -GCGGaccGCGUCGUCGaCGC-GGUGUa -5'
10737 3' -62.3 NC_002794.1 + 122989 0.69 0.46444
Target:  5'- gCGCCUGGUGCGGgccgugcugacgggcCGGCUG-GCCGuCGUg -3'
miRNA:   3'- -GCGGACCGCGUC---------------GUCGACgCGGU-GUA- -5'
10737 3' -62.3 NC_002794.1 + 101522 0.69 0.469853
Target:  5'- aCGCC-GGCG-GGguGCccgGCGCCACGUu -3'
miRNA:   3'- -GCGGaCCGCgUCguCGa--CGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 114137 0.69 0.469853
Target:  5'- cCGCCggccagGGCGC-GCAG--GCGCCGCGUc -3'
miRNA:   3'- -GCGGa-----CCGCGuCGUCgaCGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 190363 0.69 0.469853
Target:  5'- gGCCgcgcGGCGCAGCGGgUGCucCCGCu- -3'
miRNA:   3'- gCGGa---CCGCGUCGUCgACGc-GGUGua -5'
10737 3' -62.3 NC_002794.1 + 57942 0.68 0.488123
Target:  5'- uCGCCgacGCGCugcGCAGcCUGUGCCACc- -3'
miRNA:   3'- -GCGGac-CGCGu--CGUC-GACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 58623 0.68 0.488123
Target:  5'- uCGaCCUGGUGCGccugaucgccacGCAGCUGgGCgACGg -3'
miRNA:   3'- -GC-GGACCGCGU------------CGUCGACgCGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 116082 0.68 0.488123
Target:  5'- gCGCUcGGCGCGGCGGUcGuCGCCGgGg -3'
miRNA:   3'- -GCGGaCCGCGUCGUCGaC-GCGGUgUa -5'
10737 3' -62.3 NC_002794.1 + 32868 0.68 0.488123
Target:  5'- aGCCggcgGGCgGCGGCGGCgGCgGCgGCAUc -3'
miRNA:   3'- gCGGa---CCG-CGUCGUCGaCG-CGgUGUA- -5'
10737 3' -62.3 NC_002794.1 + 122662 0.68 0.488123
Target:  5'- uGCUggcGGCGCAGgccCGGCUGUGCCGg-- -3'
miRNA:   3'- gCGGa--CCGCGUC---GUCGACGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 59657 0.68 0.497382
Target:  5'- uCGCCacGGCGCuGCAGagccgcCUGCGCCuGCAc -3'
miRNA:   3'- -GCGGa-CCGCGuCGUC------GACGCGG-UGUa -5'
10737 3' -62.3 NC_002794.1 + 120805 0.68 0.50672
Target:  5'- aCGUuuUUGGaGCGGCAGCUGCGaCACGc -3'
miRNA:   3'- -GCG--GACCgCGUCGUCGACGCgGUGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.