miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10737 3' -62.3 NC_002794.1 + 93012 0.66 0.613242
Target:  5'- gCGaCgUGGUGCAGCGGCggaacccggUGCGCgGCu- -3'
miRNA:   3'- -GC-GgACCGCGUCGUCG---------ACGCGgUGua -5'
10737 3' -62.3 NC_002794.1 + 106970 0.66 0.613242
Target:  5'- uCGCCUcGCGCGGCGGCcgGCaCgGCGg -3'
miRNA:   3'- -GCGGAcCGCGUCGUCGa-CGcGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 121987 0.66 0.613242
Target:  5'- cCGCC-GaGCGCGGCcgggAGCUGUuCCACGUc -3'
miRNA:   3'- -GCGGaC-CGCGUCG----UCGACGcGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 37744 0.66 0.603369
Target:  5'- cCGCCggcggcGGCGCGGCGGCgccgGCGggaGCGg -3'
miRNA:   3'- -GCGGa-----CCGCGUCGUCGa---CGCgg-UGUa -5'
10737 3' -62.3 NC_002794.1 + 12394 0.66 0.603369
Target:  5'- uCGCCUGGCcgacaaccgcacGCGGaCGGCgcGCGCCGa-- -3'
miRNA:   3'- -GCGGACCG------------CGUC-GUCGa-CGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 185762 0.66 0.603369
Target:  5'- cCGCC-GGCGCGGCcGCc-CGUCACAc -3'
miRNA:   3'- -GCGGaCCGCGUCGuCGacGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 128151 0.67 0.593515
Target:  5'- aGCgacGCGaCGGCGGCUcGCGCCGCGg -3'
miRNA:   3'- gCGgacCGC-GUCGUCGA-CGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 118266 0.67 0.593515
Target:  5'- gGCC-GGgGCGGCGGCgccgGCGUCGgGg -3'
miRNA:   3'- gCGGaCCgCGUCGUCGa---CGCGGUgUa -5'
10737 3' -62.3 NC_002794.1 + 59340 0.67 0.593515
Target:  5'- cCGCCaccacGCGCucuacaacGGCuGCUGCGCCACc- -3'
miRNA:   3'- -GCGGac---CGCG--------UCGuCGACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 67420 0.67 0.593515
Target:  5'- gCGCCa-GCGuCGGCGGCgugucGCGCCGCu- -3'
miRNA:   3'- -GCGGacCGC-GUCGUCGa----CGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 79431 0.67 0.593515
Target:  5'- gGCCcGGCgGCGGCGGCgGCGaCCGg-- -3'
miRNA:   3'- gCGGaCCG-CGUCGUCGaCGC-GGUgua -5'
10737 3' -62.3 NC_002794.1 + 126070 0.67 0.593515
Target:  5'- gCGCCUGGCcuggaccggccuGCGGCcgaccgacuGGCUuccggcccuggGCGCCGCGc -3'
miRNA:   3'- -GCGGACCG------------CGUCG---------UCGA-----------CGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 131027 0.67 0.583688
Target:  5'- gGUCgugcGGCGCGGcCGGCUGcCGCCGa-- -3'
miRNA:   3'- gCGGa---CCGCGUC-GUCGAC-GCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 106073 0.67 0.583688
Target:  5'- cCGCC-GGCacGCGGCuuuuCUGCGCUACGUc -3'
miRNA:   3'- -GCGGaCCG--CGUCGuc--GACGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 138984 0.67 0.579766
Target:  5'- gGCCUGGCgggccugcgcgaagGCuuuGCGGCUGaagagcuCGCCGCGg -3'
miRNA:   3'- gCGGACCG--------------CGu--CGUCGAC-------GCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 145711 0.67 0.577807
Target:  5'- gGCCgaaaacggggaucgGGCGCuggaGGCGGCgGCGCCgGCAUc -3'
miRNA:   3'- gCGGa-------------CCGCG----UCGUCGaCGCGG-UGUA- -5'
10737 3' -62.3 NC_002794.1 + 59167 0.67 0.573894
Target:  5'- aCGCugCUGGCGCAGCuGCUGgacccCGUgGCGg -3'
miRNA:   3'- -GCG--GACCGCGUCGuCGAC-----GCGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 66849 0.67 0.568035
Target:  5'- cCGCCgucGGCGCGGCgaggccgcggcgugcGGCUGaGCCAUc- -3'
miRNA:   3'- -GCGGa--CCGCGUCG---------------UCGACgCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 23948 0.67 0.568035
Target:  5'- gGCCgcGGCGCacuuggcuccgagccAGCGGCgaggccgGCGCCACc- -3'
miRNA:   3'- gCGGa-CCGCG---------------UCGUCGa------CGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 90082 0.67 0.564138
Target:  5'- gGCCgaugUGGCuCGGCAcGCucUGCGCCGCGg -3'
miRNA:   3'- gCGG----ACCGcGUCGU-CG--ACGCGGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.