miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10737 3' -62.3 NC_002794.1 + 90082 0.67 0.564138
Target:  5'- gGCCgaugUGGCuCGGCAcGCucUGCGCCGCGg -3'
miRNA:   3'- gCGG----ACCGcGUCGU-CG--ACGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 98840 0.67 0.564138
Target:  5'- aCGCUcacaaGCuGCGGCUGCGCUACAUc -3'
miRNA:   3'- -GCGGaccg-CGuCGUCGACGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 184930 0.67 0.564138
Target:  5'- aGCC-GGCggucguccuGCcGCAGCUGCGCCGg-- -3'
miRNA:   3'- gCGGaCCG---------CGuCGUCGACGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 70862 0.67 0.554427
Target:  5'- gGCCUccuccggcggcGGCaGCGGCGGCUccucgaGCGCCAgGUc -3'
miRNA:   3'- gCGGA-----------CCG-CGUCGUCGA------CGCGGUgUA- -5'
10737 3' -62.3 NC_002794.1 + 124641 0.67 0.554427
Target:  5'- cCGCCaUGGUGCuGCAGacggUGCGCCcccacuGCGUg -3'
miRNA:   3'- -GCGG-ACCGCGuCGUCg---ACGCGG------UGUA- -5'
10737 3' -62.3 NC_002794.1 + 64834 0.67 0.554427
Target:  5'- gCGCCgacgaccggacGGCGCGGCGGCaccucgacGUGCCGCu- -3'
miRNA:   3'- -GCGGa----------CCGCGUCGUCGa-------CGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 117663 0.67 0.544765
Target:  5'- gCGCCacGCGCGGCGGC-GCGUacugCACGUa -3'
miRNA:   3'- -GCGGacCGCGUCGUCGaCGCG----GUGUA- -5'
10737 3' -62.3 NC_002794.1 + 190967 0.67 0.544765
Target:  5'- gCGCCUcGGgGCAGCAGagcaggcaGCGCgGCGa -3'
miRNA:   3'- -GCGGA-CCgCGUCGUCga------CGCGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 192028 0.67 0.543802
Target:  5'- uGCUguuucugUGGCgGCGGCGGCUGCuGCUGCu- -3'
miRNA:   3'- gCGG-------ACCG-CGUCGUCGACG-CGGUGua -5'
10737 3' -62.3 NC_002794.1 + 62683 0.68 0.535158
Target:  5'- cCGCCUGcG-GguGCAGCUGUGUCgGCGg -3'
miRNA:   3'- -GCGGAC-CgCguCGUCGACGCGG-UGUa -5'
10737 3' -62.3 NC_002794.1 + 111042 0.68 0.535158
Target:  5'- cCGgCUGGCGguGCAGCUcgGUCACu- -3'
miRNA:   3'- -GCgGACCGCguCGUCGAcgCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 125826 0.68 0.535158
Target:  5'- gCGuCCUcGGCGCccuGCuGCUGCGCUGCc- -3'
miRNA:   3'- -GC-GGA-CCGCGu--CGuCGACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 34155 0.68 0.535158
Target:  5'- uGCCUGGaGgAGCAGgUGCaGUCGCAg -3'
miRNA:   3'- gCGGACCgCgUCGUCgACG-CGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 58361 0.68 0.534201
Target:  5'- gGCCUGGCGCcGCccgacuuccaggaGGCgcgcggGCGCCAg-- -3'
miRNA:   3'- gCGGACCGCGuCG-------------UCGa-----CGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 136413 0.68 0.532288
Target:  5'- gCGCUgaacGGCgguccauaaccggaGCGGCGGCUGCGuCCGCu- -3'
miRNA:   3'- -GCGGa---CCG--------------CGUCGUCGACGC-GGUGua -5'
10737 3' -62.3 NC_002794.1 + 124532 0.68 0.532288
Target:  5'- cCGCCgacgcUGGCGCuGCGGCUGaagccguacaaggcCGCCAUc- -3'
miRNA:   3'- -GCGG-----ACCGCGuCGUCGAC--------------GCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 91225 0.68 0.525612
Target:  5'- aCGgCggacGGCGCGGCggccgucgGGCUGCGCuCGCGg -3'
miRNA:   3'- -GCgGa---CCGCGUCG--------UCGACGCG-GUGUa -5'
10737 3' -62.3 NC_002794.1 + 12216 0.68 0.525612
Target:  5'- uGCCggcGGCGuCGGCGGCgccggcgGCGCCGu-- -3'
miRNA:   3'- gCGGa--CCGC-GUCGUCGa------CGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 188776 0.68 0.525612
Target:  5'- aGCCcGGUGCAGCGGUaGCgGCCGg-- -3'
miRNA:   3'- gCGGaCCGCGUCGUCGaCG-CGGUgua -5'
10737 3' -62.3 NC_002794.1 + 32298 0.68 0.516131
Target:  5'- cCGCCgc-CGCGGCGGCcGCGCCGg-- -3'
miRNA:   3'- -GCGGaccGCGUCGUCGaCGCGGUgua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.