miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10737 3' -62.3 NC_002794.1 + 12216 0.68 0.525612
Target:  5'- uGCCggcGGCGuCGGCGGCgccggcgGCGCCGu-- -3'
miRNA:   3'- gCGGa--CCGC-GUCGUCGa------CGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 12394 0.66 0.603369
Target:  5'- uCGCCUGGCcgacaaccgcacGCGGaCGGCgcGCGCCGa-- -3'
miRNA:   3'- -GCGGACCG------------CGUC-GUCGa-CGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 20982 0.66 0.613242
Target:  5'- gGCagcGGCgGCGGCAGCgaccgcgGCGgCCACAg -3'
miRNA:   3'- gCGga-CCG-CGUCGUCGa------CGC-GGUGUa -5'
10737 3' -62.3 NC_002794.1 + 21701 0.72 0.296147
Target:  5'- cCGCCUcGGCGUccacgGGC-GCUGCGUCGCGa -3'
miRNA:   3'- -GCGGA-CCGCG-----UCGuCGACGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 23948 0.67 0.568035
Target:  5'- gGCCgcGGCGCacuuggcuccgagccAGCGGCgaggccgGCGCCACc- -3'
miRNA:   3'- gCGGa-CCGCG---------------UCGUCGa------CGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 32298 0.68 0.516131
Target:  5'- cCGCCgc-CGCGGCGGCcGCGCCGg-- -3'
miRNA:   3'- -GCGGaccGCGUCGUCGaCGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 32868 0.68 0.488123
Target:  5'- aGCCggcgGGCgGCGGCGGCgGCgGCgGCAUc -3'
miRNA:   3'- gCGGa---CCG-CGUCGUCGaCG-CGgUGUA- -5'
10737 3' -62.3 NC_002794.1 + 33535 0.7 0.41727
Target:  5'- gGCCUGGCcaccCAGCuGgUGCGCCAgAa -3'
miRNA:   3'- gCGGACCGc---GUCGuCgACGCGGUgUa -5'
10737 3' -62.3 NC_002794.1 + 34155 0.68 0.535158
Target:  5'- uGCCUGGaGgAGCAGgUGCaGUCGCAg -3'
miRNA:   3'- gCGGACCgCgUCGUCgACG-CGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 34226 0.7 0.376298
Target:  5'- gCGCaaGGUGCAggagcugcacgcGCGGCUGCcGCCGCAg -3'
miRNA:   3'- -GCGgaCCGCGU------------CGUCGACG-CGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 34840 0.69 0.451939
Target:  5'- gCGCCggagcgGGCGUcGgAGCggGCGCCGCGg -3'
miRNA:   3'- -GCGGa-----CCGCGuCgUCGa-CGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 37744 0.66 0.603369
Target:  5'- cCGCCggcggcGGCGCGGCGGCgccgGCGggaGCGg -3'
miRNA:   3'- -GCGGa-----CCGCGUCGUCGa---CGCgg-UGUa -5'
10737 3' -62.3 NC_002794.1 + 38457 0.66 0.613242
Target:  5'- aGCC-GGCGCGGCcGCggcGCGCCc--- -3'
miRNA:   3'- gCGGaCCGCGUCGuCGa--CGCGGugua -5'
10737 3' -62.3 NC_002794.1 + 41890 0.69 0.434404
Target:  5'- aCGCCacguaGCGCuccAGCAGC-GCGCCACGa -3'
miRNA:   3'- -GCGGac---CGCG---UCGUCGaCGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 50567 0.69 0.443123
Target:  5'- aGCCUGucgacacggcguGCGCGGCGGCUggguggccgGCGCCGgGg -3'
miRNA:   3'- gCGGAC------------CGCGUCGUCGA---------CGCGGUgUa -5'
10737 3' -62.3 NC_002794.1 + 52649 0.69 0.451939
Target:  5'- aGCCgGaGCgGCGGCAGgcuCUGCGCCACc- -3'
miRNA:   3'- gCGGaC-CG-CGUCGUC---GACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 53531 0.71 0.360687
Target:  5'- aGCCgugGGCGCGGCGGCcGCacaGCC-CGUg -3'
miRNA:   3'- gCGGa--CCGCGUCGUCGaCG---CGGuGUA- -5'
10737 3' -62.3 NC_002794.1 + 57132 0.69 0.455492
Target:  5'- gGCCUGGUGCAcaacuuccugcucacGCuGCUGCgcaaggcgccGCCGCAc -3'
miRNA:   3'- gCGGACCGCGU---------------CGuCGACG----------CGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 57228 0.71 0.330841
Target:  5'- aGCCUGacGCGCGuGCAGC-GCGCCAaCAUc -3'
miRNA:   3'- gCGGAC--CGCGU-CGUCGaCGCGGU-GUA- -5'
10737 3' -62.3 NC_002794.1 + 57942 0.68 0.488123
Target:  5'- uCGCCgacGCGCugcGCAGcCUGUGCCACc- -3'
miRNA:   3'- -GCGGac-CGCGu--CGUC-GACGCGGUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.