miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10737 3' -62.3 NC_002794.1 + 91225 0.68 0.525612
Target:  5'- aCGgCggacGGCGCGGCggccgucgGGCUGCGCuCGCGg -3'
miRNA:   3'- -GCgGa---CCGCGUCG--------UCGACGCG-GUGUa -5'
10737 3' -62.3 NC_002794.1 + 91598 0.66 0.642914
Target:  5'- gGCCgcUGGUGCGcGCGGCcgaGgGCCACGc -3'
miRNA:   3'- gCGG--ACCGCGU-CGUCGa--CgCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 93012 0.66 0.613242
Target:  5'- gCGaCgUGGUGCAGCGGCggaacccggUGCGCgGCu- -3'
miRNA:   3'- -GC-GgACCGCGUCGUCG---------ACGCGgUGua -5'
10737 3' -62.3 NC_002794.1 + 93709 0.71 0.353052
Target:  5'- gCGCCUGGuCGaccuGCuGUUGCGCCGCu- -3'
miRNA:   3'- -GCGGACC-GCgu--CGuCGACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 98840 0.67 0.564138
Target:  5'- aCGCUcacaaGCuGCGGCUGCGCUACAUc -3'
miRNA:   3'- -GCGGaccg-CGuCGUCGACGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 99143 0.69 0.451939
Target:  5'- -aCCUGGCGCAGCAGacccaGCGgCACc- -3'
miRNA:   3'- gcGGACCGCGUCGUCga---CGCgGUGua -5'
10737 3' -62.3 NC_002794.1 + 99587 0.7 0.40886
Target:  5'- uGCggagGGCGCGGCGGCgGCGCgCGCu- -3'
miRNA:   3'- gCGga--CCGCGUCGUCGaCGCG-GUGua -5'
10737 3' -62.3 NC_002794.1 + 100786 0.66 0.642914
Target:  5'- gCGCCUGcgguuCGCGGCcGCuucUGCGCCuACGUg -3'
miRNA:   3'- -GCGGACc----GCGUCGuCG---ACGCGG-UGUA- -5'
10737 3' -62.3 NC_002794.1 + 101522 0.69 0.469853
Target:  5'- aCGCC-GGCG-GGguGCccgGCGCCACGUu -3'
miRNA:   3'- -GCGGaCCGCgUCguCGa--CGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 101804 0.76 0.180976
Target:  5'- cCGCUgguUGGCGCAGCGGC-GCGCCGu-- -3'
miRNA:   3'- -GCGG---ACCGCGUCGUCGaCGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 102499 0.7 0.392359
Target:  5'- aCGuCCUGuuGCAGCGGCUGgCGCgCGCGc -3'
miRNA:   3'- -GC-GGACcgCGUCGUCGAC-GCG-GUGUa -5'
10737 3' -62.3 NC_002794.1 + 103965 0.66 0.642914
Target:  5'- cCGCC-GGCGCuucagacugcgGGCgAGCUuCGCCGCGa -3'
miRNA:   3'- -GCGGaCCGCG-----------UCG-UCGAcGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 104527 0.69 0.451939
Target:  5'- gCGCgggUGGCGCGGgaagAGCUGCGCCAgCGUc -3'
miRNA:   3'- -GCGg--ACCGCGUCg---UCGACGCGGU-GUA- -5'
10737 3' -62.3 NC_002794.1 + 104898 0.68 0.515187
Target:  5'- cCGCgaGGCGCcguGCuGCUcgagcagGCGCCGCGUc -3'
miRNA:   3'- -GCGgaCCGCGu--CGuCGA-------CGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 106073 0.67 0.583688
Target:  5'- cCGCC-GGCacGCGGCuuuuCUGCGCUACGUc -3'
miRNA:   3'- -GCGGaCCG--CGUCGuc--GACGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 106665 0.69 0.434404
Target:  5'- gGCCgGGCGguGUcGCUGUGCUGCu- -3'
miRNA:   3'- gCGGaCCGCguCGuCGACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 106970 0.66 0.613242
Target:  5'- uCGCCUcGCGCGGCGGCcgGCaCgGCGg -3'
miRNA:   3'- -GCGGAcCGCGUCGUCGa-CGcGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 107210 0.69 0.451939
Target:  5'- uCGCCcGGCGCcgccgGGCGGC-GCGCgACGg -3'
miRNA:   3'- -GCGGaCCGCG-----UCGUCGaCGCGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 108982 0.72 0.289557
Target:  5'- aGCgUGGCGaAGCuGCUGCGCCuCGUg -3'
miRNA:   3'- gCGgACCGCgUCGuCGACGCGGuGUA- -5'
10737 3' -62.3 NC_002794.1 + 111042 0.68 0.535158
Target:  5'- cCGgCUGGCGguGCAGCUcgGUCACu- -3'
miRNA:   3'- -GCgGACCGCguCGUCGAcgCGGUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.