miRNA display CGI


Results 61 - 80 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10737 3' -62.3 NC_002794.1 + 111320 0.71 0.338129
Target:  5'- aCGCCgGGC-CAGCGGCgcGgGCCGCAg -3'
miRNA:   3'- -GCGGaCCGcGUCGUCGa-CgCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 111639 0.73 0.276723
Target:  5'- cCGCCggucgGGCGCcGCGGCcGCGgCCACGc -3'
miRNA:   3'- -GCGGa----CCGCGuCGUCGaCGC-GGUGUa -5'
10737 3' -62.3 NC_002794.1 + 113852 0.66 0.652799
Target:  5'- aGCCUGGCGU-GCAGUuccgGCcaggcgcgcucgGCCGCGg -3'
miRNA:   3'- gCGGACCGCGuCGUCGa---CG------------CGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 114137 0.69 0.469853
Target:  5'- cCGCCggccagGGCGC-GCAG--GCGCCGCGUc -3'
miRNA:   3'- -GCGGa-----CCGCGuCGUCgaCGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 114187 0.73 0.264348
Target:  5'- gGCCaGGCGCAGCg---GCGCCACGg -3'
miRNA:   3'- gCGGaCCGCGUCGucgaCGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 114360 0.66 0.652799
Target:  5'- cCGCCagGGC-CGGCuGCaGgGCCGCGUa -3'
miRNA:   3'- -GCGGa-CCGcGUCGuCGaCgCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 115922 0.73 0.276723
Target:  5'- gGaCUUGGCGCGGCGGCgggccgGCccGCCGCGUg -3'
miRNA:   3'- gC-GGACCGCGUCGUCGa-----CG--CGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 116082 0.68 0.488123
Target:  5'- gCGCUcGGCGCGGCGGUcGuCGCCGgGg -3'
miRNA:   3'- -GCGGaCCGCGUCGUCGaC-GCGGUgUa -5'
10737 3' -62.3 NC_002794.1 + 116128 0.68 0.50672
Target:  5'- cCGCCgcGGCgGCGGCGGCgGCgGCCAgGg -3'
miRNA:   3'- -GCGGa-CCG-CGUCGUCGaCG-CGGUgUa -5'
10737 3' -62.3 NC_002794.1 + 117284 0.66 0.633022
Target:  5'- aCGCCcuGCGCGGaCAGCUGCGgCGu-- -3'
miRNA:   3'- -GCGGacCGCGUC-GUCGACGCgGUgua -5'
10737 3' -62.3 NC_002794.1 + 117663 0.67 0.544765
Target:  5'- gCGCCacGCGCGGCGGC-GCGUacugCACGUa -3'
miRNA:   3'- -GCGGacCGCGUCGUCGaCGCG----GUGUA- -5'
10737 3' -62.3 NC_002794.1 + 117702 0.7 0.41727
Target:  5'- aCGCCgcgacGGCGUGGCAGCUccGCGucugcuCCACGUa -3'
miRNA:   3'- -GCGGa----CCGCGUCGUCGA--CGC------GGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 118266 0.67 0.593515
Target:  5'- gGCC-GGgGCGGCGGCgccgGCGUCGgGg -3'
miRNA:   3'- gCGGaCCgCGUCGUCGa---CGCGGUgUa -5'
10737 3' -62.3 NC_002794.1 + 120805 0.68 0.50672
Target:  5'- aCGUuuUUGGaGCGGCAGCUGCGaCACGc -3'
miRNA:   3'- -GCG--GACCgCGUCGUCGACGCgGUGUa -5'
10737 3' -62.3 NC_002794.1 + 121987 0.66 0.613242
Target:  5'- cCGCC-GaGCGCGGCcgggAGCUGUuCCACGUc -3'
miRNA:   3'- -GCGGaC-CGCGUCG----UCGACGcGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 122662 0.68 0.488123
Target:  5'- uGCUggcGGCGCAGgccCGGCUGUGCCGg-- -3'
miRNA:   3'- gCGGa--CCGCGUC---GUCGACGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 122989 0.69 0.46444
Target:  5'- gCGCCUGGUGCGGgccgugcugacgggcCGGCUG-GCCGuCGUg -3'
miRNA:   3'- -GCGGACCGCGUC---------------GUCGACgCGGU-GUA- -5'
10737 3' -62.3 NC_002794.1 + 123236 0.7 0.400555
Target:  5'- gGCCUGGC-CAuCAGcCUGUGCCACu- -3'
miRNA:   3'- gCGGACCGcGUcGUC-GACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 124381 0.72 0.302853
Target:  5'- uCGCCUcGGuCGCGGCGGC-GCGUCGCc- -3'
miRNA:   3'- -GCGGA-CC-GCGUCGUCGaCGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 124532 0.68 0.532288
Target:  5'- cCGCCgacgcUGGCGCuGCGGCUGaagccguacaaggcCGCCAUc- -3'
miRNA:   3'- -GCGG-----ACCGCGuCGUCGAC--------------GCGGUGua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.