miRNA display CGI


Results 81 - 100 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10737 3' -62.3 NC_002794.1 + 124641 0.67 0.554427
Target:  5'- cCGCCaUGGUGCuGCAGacggUGCGCCcccacuGCGUg -3'
miRNA:   3'- -GCGG-ACCGCGuCGUCg---ACGCGG------UGUA- -5'
10737 3' -62.3 NC_002794.1 + 125826 0.68 0.535158
Target:  5'- gCGuCCUcGGCGCccuGCuGCUGCGCUGCc- -3'
miRNA:   3'- -GC-GGA-CCGCGu--CGuCGACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 126070 0.67 0.593515
Target:  5'- gCGCCUGGCcuggaccggccuGCGGCcgaccgacuGGCUuccggcccuggGCGCCGCGc -3'
miRNA:   3'- -GCGGACCG------------CGUCG---------UCGA-----------CGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 126304 0.77 0.148703
Target:  5'- gCGCCUGGCGguGCAGCggaGCGUgACc- -3'
miRNA:   3'- -GCGGACCGCguCGUCGa--CGCGgUGua -5'
10737 3' -62.3 NC_002794.1 + 126391 0.76 0.180976
Target:  5'- gGCCU-GCGCGGCGGCgUGCGCgGCGg -3'
miRNA:   3'- gCGGAcCGCGUCGUCG-ACGCGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 127092 0.66 0.652799
Target:  5'- cCGgCUGGagaGCGGCGGCU-CGCCGa-- -3'
miRNA:   3'- -GCgGACCg--CGUCGUCGAcGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 128151 0.67 0.593515
Target:  5'- aGCgacGCGaCGGCGGCUcGCGCCGCGg -3'
miRNA:   3'- gCGgacCGC-GUCGUCGA-CGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 129932 0.66 0.623129
Target:  5'- gGCCgUGGCGaCGGCGGCgGCgGCgGCu- -3'
miRNA:   3'- gCGG-ACCGC-GUCGUCGaCG-CGgUGua -5'
10737 3' -62.3 NC_002794.1 + 130462 0.7 0.41727
Target:  5'- gGCgaGGCGCuGGCGGCuugcgUGCGCgACAUg -3'
miRNA:   3'- gCGgaCCGCG-UCGUCG-----ACGCGgUGUA- -5'
10737 3' -62.3 NC_002794.1 + 131027 0.67 0.583688
Target:  5'- gGUCgugcGGCGCGGcCGGCUGcCGCCGa-- -3'
miRNA:   3'- gCGGa---CCGCGUC-GUCGAC-GCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 136413 0.68 0.532288
Target:  5'- gCGCUgaacGGCgguccauaaccggaGCGGCGGCUGCGuCCGCu- -3'
miRNA:   3'- -GCGGa---CCG--------------CGUCGUCGACGC-GGUGua -5'
10737 3' -62.3 NC_002794.1 + 137606 0.71 0.360687
Target:  5'- cCGCCggcGGuCGCGGCGGCgGUGcCCACGa -3'
miRNA:   3'- -GCGGa--CC-GCGUCGUCGaCGC-GGUGUa -5'
10737 3' -62.3 NC_002794.1 + 137986 0.69 0.443123
Target:  5'- uCGCCgcaGCGCugguGCAGCUGgGCgCGCAg -3'
miRNA:   3'- -GCGGac-CGCGu---CGUCGACgCG-GUGUa -5'
10737 3' -62.3 NC_002794.1 + 138984 0.67 0.579766
Target:  5'- gGCCUGGCgggccugcgcgaagGCuuuGCGGCUGaagagcuCGCCGCGg -3'
miRNA:   3'- gCGGACCG--------------CGu--CGUCGAC-------GCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 141440 0.69 0.425786
Target:  5'- gCGCCgggGGCGcCGGgAGCgGCGCgGCGUc -3'
miRNA:   3'- -GCGGa--CCGC-GUCgUCGaCGCGgUGUA- -5'
10737 3' -62.3 NC_002794.1 + 145005 1.06 0.001271
Target:  5'- cCGCCUGGCGCAGCAGCUGCGCCACAUg -3'
miRNA:   3'- -GCGGACCGCGUCGUCGACGCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 145711 0.67 0.577807
Target:  5'- gGCCgaaaacggggaucgGGCGCuggaGGCGGCgGCGCCgGCAUc -3'
miRNA:   3'- gCGGa-------------CCGCG----UCGUCGaCGCGG-UGUA- -5'
10737 3' -62.3 NC_002794.1 + 148514 0.69 0.434404
Target:  5'- uCGaCUGGa--AGCGGCUGCGCCGCu- -3'
miRNA:   3'- -GCgGACCgcgUCGUCGACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 149277 0.75 0.185421
Target:  5'- cCGCCggcGGCGCGGCGGCU-CGCuCACGg -3'
miRNA:   3'- -GCGGa--CCGCGUCGUCGAcGCG-GUGUa -5'
10737 3' -62.3 NC_002794.1 + 150867 0.66 0.613242
Target:  5'- aCGCCUauagccGGCGCAGCGacCUGCuCUACAUc -3'
miRNA:   3'- -GCGGA------CCGCGUCGUc-GACGcGGUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.