Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10737 | 3' | -62.3 | NC_002794.1 | + | 156403 | 0.71 | 0.353052 |
Target: 5'- gGCC-GGCGCcGCGGCcGCGgCCACGg -3' miRNA: 3'- gCGGaCCGCGuCGUCGaCGC-GGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 152423 | 0.66 | 0.623129 |
Target: 5'- uGCCccgGGCcgucuguCGGCAGCUGgGCUACGc -3' miRNA: 3'- gCGGa--CCGc------GUCGUCGACgCGGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 152108 | 0.7 | 0.41727 |
Target: 5'- cCGUCUGGgGCuu--GCUGCGCCGCu- -3' miRNA: 3'- -GCGGACCgCGucguCGACGCGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 150867 | 0.66 | 0.613242 |
Target: 5'- aCGCCUauagccGGCGCAGCGacCUGCuCUACAUc -3' miRNA: 3'- -GCGGA------CCGCGUCGUc-GACGcGGUGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 149277 | 0.75 | 0.185421 |
Target: 5'- cCGCCggcGGCGCGGCGGCU-CGCuCACGg -3' miRNA: 3'- -GCGGa--CCGCGUCGUCGAcGCG-GUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 148514 | 0.69 | 0.434404 |
Target: 5'- uCGaCUGGa--AGCGGCUGCGCCGCu- -3' miRNA: 3'- -GCgGACCgcgUCGUCGACGCGGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 145711 | 0.67 | 0.577807 |
Target: 5'- gGCCgaaaacggggaucgGGCGCuggaGGCGGCgGCGCCgGCAUc -3' miRNA: 3'- gCGGa-------------CCGCG----UCGUCGaCGCGG-UGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 145005 | 1.06 | 0.001271 |
Target: 5'- cCGCCUGGCGCAGCAGCUGCGCCACAUg -3' miRNA: 3'- -GCGGACCGCGUCGUCGACGCGGUGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 141440 | 0.69 | 0.425786 |
Target: 5'- gCGCCgggGGCGcCGGgAGCgGCGCgGCGUc -3' miRNA: 3'- -GCGGa--CCGC-GUCgUCGaCGCGgUGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 138984 | 0.67 | 0.579766 |
Target: 5'- gGCCUGGCgggccugcgcgaagGCuuuGCGGCUGaagagcuCGCCGCGg -3' miRNA: 3'- gCGGACCG--------------CGu--CGUCGAC-------GCGGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 137986 | 0.69 | 0.443123 |
Target: 5'- uCGCCgcaGCGCugguGCAGCUGgGCgCGCAg -3' miRNA: 3'- -GCGGac-CGCGu---CGUCGACgCG-GUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 137606 | 0.71 | 0.360687 |
Target: 5'- cCGCCggcGGuCGCGGCGGCgGUGcCCACGa -3' miRNA: 3'- -GCGGa--CC-GCGUCGUCGaCGC-GGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 136413 | 0.68 | 0.532288 |
Target: 5'- gCGCUgaacGGCgguccauaaccggaGCGGCGGCUGCGuCCGCu- -3' miRNA: 3'- -GCGGa---CCG--------------CGUCGUCGACGC-GGUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 131027 | 0.67 | 0.583688 |
Target: 5'- gGUCgugcGGCGCGGcCGGCUGcCGCCGa-- -3' miRNA: 3'- gCGGa---CCGCGUC-GUCGAC-GCGGUgua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 130462 | 0.7 | 0.41727 |
Target: 5'- gGCgaGGCGCuGGCGGCuugcgUGCGCgACAUg -3' miRNA: 3'- gCGgaCCGCG-UCGUCG-----ACGCGgUGUA- -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 129932 | 0.66 | 0.623129 |
Target: 5'- gGCCgUGGCGaCGGCGGCgGCgGCgGCu- -3' miRNA: 3'- gCGG-ACCGC-GUCGUCGaCG-CGgUGua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 128151 | 0.67 | 0.593515 |
Target: 5'- aGCgacGCGaCGGCGGCUcGCGCCGCGg -3' miRNA: 3'- gCGgacCGC-GUCGUCGA-CGCGGUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 127092 | 0.66 | 0.652799 |
Target: 5'- cCGgCUGGagaGCGGCGGCU-CGCCGa-- -3' miRNA: 3'- -GCgGACCg--CGUCGUCGAcGCGGUgua -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 126391 | 0.76 | 0.180976 |
Target: 5'- gGCCU-GCGCGGCGGCgUGCGCgGCGg -3' miRNA: 3'- gCGGAcCGCGUCGUCG-ACGCGgUGUa -5' |
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10737 | 3' | -62.3 | NC_002794.1 | + | 126304 | 0.77 | 0.148703 |
Target: 5'- gCGCCUGGCGguGCAGCggaGCGUgACc- -3' miRNA: 3'- -GCGGACCGCguCGUCGa--CGCGgUGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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