miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10737 3' -62.3 NC_002794.1 + 61877 0.66 0.642914
Target:  5'- gCGCCgucgucGGCGCcgcGCGGCgaGCGCgGCGa -3'
miRNA:   3'- -GCGGa-----CCGCGu--CGUCGa-CGCGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 192616 0.66 0.642914
Target:  5'- cCGCCaGGUGCGGaCAGUcggGCgGCCGCu- -3'
miRNA:   3'- -GCGGaCCGCGUC-GUCGa--CG-CGGUGua -5'
10737 3' -62.3 NC_002794.1 + 113852 0.66 0.652799
Target:  5'- aGCCUGGCGU-GCAGUuccgGCcaggcgcgcucgGCCGCGg -3'
miRNA:   3'- gCGGACCGCGuCGUCGa---CG------------CGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 127092 0.66 0.652799
Target:  5'- cCGgCUGGagaGCGGCGGCU-CGCCGa-- -3'
miRNA:   3'- -GCgGACCg--CGUCGUCGAcGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 114360 0.66 0.652799
Target:  5'- cCGCCagGGC-CGGCuGCaGgGCCGCGUa -3'
miRNA:   3'- -GCGGa-CCGcGUCGuCGaCgCGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 129932 0.66 0.623129
Target:  5'- gGCCgUGGCGaCGGCGGCgGCgGCgGCu- -3'
miRNA:   3'- gCGG-ACCGC-GUCGUCGaCG-CGgUGua -5'
10737 3' -62.3 NC_002794.1 + 152423 0.66 0.623129
Target:  5'- uGCCccgGGCcgucuguCGGCAGCUGgGCUACGc -3'
miRNA:   3'- gCGGa--CCGc------GUCGUCGACgCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 67420 0.67 0.593515
Target:  5'- gCGCCa-GCGuCGGCGGCgugucGCGCCGCu- -3'
miRNA:   3'- -GCGGacCGC-GUCGUCGa----CGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 79431 0.67 0.593515
Target:  5'- gGCCcGGCgGCGGCGGCgGCGaCCGg-- -3'
miRNA:   3'- gCGGaCCG-CGUCGUCGaCGC-GGUgua -5'
10737 3' -62.3 NC_002794.1 + 126070 0.67 0.593515
Target:  5'- gCGCCUGGCcuggaccggccuGCGGCcgaccgacuGGCUuccggcccuggGCGCCGCGc -3'
miRNA:   3'- -GCGGACCG------------CGUCG---------UCGA-----------CGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 185762 0.66 0.603369
Target:  5'- cCGCC-GGCGCGGCcGCc-CGUCACAc -3'
miRNA:   3'- -GCGGaCCGCGUCGuCGacGCGGUGUa -5'
10737 3' -62.3 NC_002794.1 + 12394 0.66 0.603369
Target:  5'- uCGCCUGGCcgacaaccgcacGCGGaCGGCgcGCGCCGa-- -3'
miRNA:   3'- -GCGGACCG------------CGUC-GUCGa-CGCGGUgua -5'
10737 3' -62.3 NC_002794.1 + 37744 0.66 0.603369
Target:  5'- cCGCCggcggcGGCGCGGCGGCgccgGCGggaGCGg -3'
miRNA:   3'- -GCGGa-----CCGCGUCGUCGa---CGCgg-UGUa -5'
10737 3' -62.3 NC_002794.1 + 20982 0.66 0.613242
Target:  5'- gGCagcGGCgGCGGCAGCgaccgcgGCGgCCACAg -3'
miRNA:   3'- gCGga-CCG-CGUCGUCGa------CGC-GGUGUa -5'
10737 3' -62.3 NC_002794.1 + 38457 0.66 0.613242
Target:  5'- aGCC-GGCGCGGCcGCggcGCGCCc--- -3'
miRNA:   3'- gCGGaCCGCGUCGuCGa--CGCGGugua -5'
10737 3' -62.3 NC_002794.1 + 150867 0.66 0.613242
Target:  5'- aCGCCUauagccGGCGCAGCGacCUGCuCUACAUc -3'
miRNA:   3'- -GCGGA------CCGCGUCGUc-GACGcGGUGUA- -5'
10737 3' -62.3 NC_002794.1 + 93012 0.66 0.613242
Target:  5'- gCGaCgUGGUGCAGCGGCggaacccggUGCGCgGCu- -3'
miRNA:   3'- -GC-GgACCGCGUCGUCG---------ACGCGgUGua -5'
10737 3' -62.3 NC_002794.1 + 106970 0.66 0.613242
Target:  5'- uCGCCUcGCGCGGCGGCcgGCaCgGCGg -3'
miRNA:   3'- -GCGGAcCGCGUCGUCGa-CGcGgUGUa -5'
10737 3' -62.3 NC_002794.1 + 71116 0.66 0.617195
Target:  5'- gGCCggagaGGCGCucguucaucuccgucAGCgGGCUGUGCCGCc- -3'
miRNA:   3'- gCGGa----CCGCG---------------UCG-UCGACGCGGUGua -5'
10737 3' -62.3 NC_002794.1 + 121987 0.66 0.613242
Target:  5'- cCGCC-GaGCGCGGCcgggAGCUGUuCCACGUc -3'
miRNA:   3'- -GCGGaC-CGCGUCG----UCGACGcGGUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.