miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10737 5' -49 NC_002794.1 + 66668 0.66 0.999706
Target:  5'- ---gGCGucGUGGUCAACggCcCCGGc -3'
miRNA:   3'- cuuaUGCucCACCAGUUGaaGuGGCU- -5'
10737 5' -49 NC_002794.1 + 100369 0.66 0.999425
Target:  5'- gGAcUGCGAGGUGGcCGACgu--CCGc -3'
miRNA:   3'- -CUuAUGCUCCACCaGUUGaaguGGCu -5'
10737 5' -49 NC_002794.1 + 3557 0.66 0.999347
Target:  5'- aGGAUGgGGGGcGGUCAaucgccccccagcccACcgagUCACCGAg -3'
miRNA:   3'- -CUUAUgCUCCaCCAGU---------------UGa---AGUGGCU- -5'
10737 5' -49 NC_002794.1 + 148775 0.66 0.99929
Target:  5'- gGAGUGCGccuGGUacccGGUCcGCaccgUCGCCGAg -3'
miRNA:   3'- -CUUAUGCu--CCA----CCAGuUGa---AGUGGCU- -5'
10737 5' -49 NC_002794.1 + 123431 0.67 0.998709
Target:  5'- ---gACGAGGcGGU-GACcgUCGCCGAg -3'
miRNA:   3'- cuuaUGCUCCaCCAgUUGa-AGUGGCU- -5'
10737 5' -49 NC_002794.1 + 11255 0.67 0.998442
Target:  5'- -cGUACGAGG-GGUCGggcgACgcggUCACCu- -3'
miRNA:   3'- cuUAUGCUCCaCCAGU----UGa---AGUGGcu -5'
10737 5' -49 NC_002794.1 + 26669 0.68 0.997767
Target:  5'- ---gGCGGGGUGG--AGCgcCACCGAg -3'
miRNA:   3'- cuuaUGCUCCACCagUUGaaGUGGCU- -5'
10737 5' -49 NC_002794.1 + 156473 0.68 0.996862
Target:  5'- ---gGCGGGGgacgacgGGgCGGCUUUACCGGu -3'
miRNA:   3'- cuuaUGCUCCa------CCaGUUGAAGUGGCU- -5'
10737 5' -49 NC_002794.1 + 145906 0.68 0.996306
Target:  5'- ---gACGGGG-GaGUCGACcgCGCCGAg -3'
miRNA:   3'- cuuaUGCUCCaC-CAGUUGaaGUGGCU- -5'
10737 5' -49 NC_002794.1 + 13104 0.68 0.995673
Target:  5'- ---gACGAGGUGcGuUCGGCggggUCGCCGc -3'
miRNA:   3'- cuuaUGCUCCAC-C-AGUUGa---AGUGGCu -5'
10737 5' -49 NC_002794.1 + 873 0.68 0.995673
Target:  5'- ---cGCGAGGcGGUCGGCgugCGCgCGGg -3'
miRNA:   3'- cuuaUGCUCCaCCAGUUGaa-GUG-GCU- -5'
10737 5' -49 NC_002794.1 + 132579 0.69 0.994953
Target:  5'- ---gACcGGGUGGgCcGCUUCACCGGg -3'
miRNA:   3'- cuuaUGcUCCACCaGuUGAAGUGGCU- -5'
10737 5' -49 NC_002794.1 + 191310 0.69 0.993223
Target:  5'- cGGAUGCGAGG-GGcCGGCgu-GCCGGu -3'
miRNA:   3'- -CUUAUGCUCCaCCaGUUGaagUGGCU- -5'
10737 5' -49 NC_002794.1 + 6022 0.71 0.973833
Target:  5'- -----aGAGcGUGGUCGccaGCUUUACCGAa -3'
miRNA:   3'- cuuaugCUC-CACCAGU---UGAAGUGGCU- -5'
10737 5' -49 NC_002794.1 + 61597 0.72 0.967942
Target:  5'- ---gACGAGGUGGcCAAacUCACCGc -3'
miRNA:   3'- cuuaUGCUCCACCaGUUgaAGUGGCu -5'
10737 5' -49 NC_002794.1 + 149074 0.75 0.87912
Target:  5'- ---aGCG-GGUGGUCAAgcUCGCCGAg -3'
miRNA:   3'- cuuaUGCuCCACCAGUUgaAGUGGCU- -5'
10737 5' -49 NC_002794.1 + 96117 0.76 0.831192
Target:  5'- ---gACGGGGUGGUCGACgUUgACCGc -3'
miRNA:   3'- cuuaUGCUCCACCAGUUG-AAgUGGCu -5'
10737 5' -49 NC_002794.1 + 145041 1.1 0.016012
Target:  5'- gGAAUACGAGGUGGUCAACUUCACCGAg -3'
miRNA:   3'- -CUUAUGCUCCACCAGUUGAAGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.