Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10737 | 5' | -49 | NC_002794.1 | + | 873 | 0.68 | 0.995673 |
Target: 5'- ---cGCGAGGcGGUCGGCgugCGCgCGGg -3' miRNA: 3'- cuuaUGCUCCaCCAGUUGaa-GUG-GCU- -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 3557 | 0.66 | 0.999347 |
Target: 5'- aGGAUGgGGGGcGGUCAaucgccccccagcccACcgagUCACCGAg -3' miRNA: 3'- -CUUAUgCUCCaCCAGU---------------UGa---AGUGGCU- -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 6022 | 0.71 | 0.973833 |
Target: 5'- -----aGAGcGUGGUCGccaGCUUUACCGAa -3' miRNA: 3'- cuuaugCUC-CACCAGU---UGAAGUGGCU- -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 11255 | 0.67 | 0.998442 |
Target: 5'- -cGUACGAGG-GGUCGggcgACgcggUCACCu- -3' miRNA: 3'- cuUAUGCUCCaCCAGU----UGa---AGUGGcu -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 13104 | 0.68 | 0.995673 |
Target: 5'- ---gACGAGGUGcGuUCGGCggggUCGCCGc -3' miRNA: 3'- cuuaUGCUCCAC-C-AGUUGa---AGUGGCu -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 26669 | 0.68 | 0.997767 |
Target: 5'- ---gGCGGGGUGG--AGCgcCACCGAg -3' miRNA: 3'- cuuaUGCUCCACCagUUGaaGUGGCU- -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 61597 | 0.72 | 0.967942 |
Target: 5'- ---gACGAGGUGGcCAAacUCACCGc -3' miRNA: 3'- cuuaUGCUCCACCaGUUgaAGUGGCu -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 66668 | 0.66 | 0.999706 |
Target: 5'- ---gGCGucGUGGUCAACggCcCCGGc -3' miRNA: 3'- cuuaUGCucCACCAGUUGaaGuGGCU- -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 96117 | 0.76 | 0.831192 |
Target: 5'- ---gACGGGGUGGUCGACgUUgACCGc -3' miRNA: 3'- cuuaUGCUCCACCAGUUG-AAgUGGCu -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 100369 | 0.66 | 0.999425 |
Target: 5'- gGAcUGCGAGGUGGcCGACgu--CCGc -3' miRNA: 3'- -CUuAUGCUCCACCaGUUGaaguGGCu -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 123431 | 0.67 | 0.998709 |
Target: 5'- ---gACGAGGcGGU-GACcgUCGCCGAg -3' miRNA: 3'- cuuaUGCUCCaCCAgUUGa-AGUGGCU- -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 132579 | 0.69 | 0.994953 |
Target: 5'- ---gACcGGGUGGgCcGCUUCACCGGg -3' miRNA: 3'- cuuaUGcUCCACCaGuUGAAGUGGCU- -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 145041 | 1.1 | 0.016012 |
Target: 5'- gGAAUACGAGGUGGUCAACUUCACCGAg -3' miRNA: 3'- -CUUAUGCUCCACCAGUUGAAGUGGCU- -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 145906 | 0.68 | 0.996306 |
Target: 5'- ---gACGGGG-GaGUCGACcgCGCCGAg -3' miRNA: 3'- cuuaUGCUCCaC-CAGUUGaaGUGGCU- -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 148775 | 0.66 | 0.99929 |
Target: 5'- gGAGUGCGccuGGUacccGGUCcGCaccgUCGCCGAg -3' miRNA: 3'- -CUUAUGCu--CCA----CCAGuUGa---AGUGGCU- -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 149074 | 0.75 | 0.87912 |
Target: 5'- ---aGCG-GGUGGUCAAgcUCGCCGAg -3' miRNA: 3'- cuuaUGCuCCACCAGUUgaAGUGGCU- -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 156473 | 0.68 | 0.996862 |
Target: 5'- ---gGCGGGGgacgacgGGgCGGCUUUACCGGu -3' miRNA: 3'- cuuaUGCUCCa------CCaGUUGAAGUGGCU- -5' |
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10737 | 5' | -49 | NC_002794.1 | + | 191310 | 0.69 | 0.993223 |
Target: 5'- cGGAUGCGAGG-GGcCGGCgu-GCCGGu -3' miRNA: 3'- -CUUAUGCUCCaCCaGUUGaagUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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