miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 129028 0.65 0.797807
Target:  5'- cCGCCGucucggcgaacugucUGCGGUCGUG-GCGCGCg -3'
miRNA:   3'- cGCGGCuc-------------ACGUCGGCACgCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 127495 0.65 0.797807
Target:  5'- uGCGCCGGGaaaugcucaggagcUGgGGCUGUGcCGcCGCGauCCu -3'
miRNA:   3'- -CGCGGCUC--------------ACgUCGGCAC-GC-GCGU--GG- -5'
10738 3' -60.8 NC_002794.1 + 57127 0.66 0.79524
Target:  5'- aGCGCgGccuGGUGCAcaacuuccugcucacGCUGcUGCGCaagGCGCCg -3'
miRNA:   3'- -CGCGgC---UCACGU---------------CGGC-ACGCG---CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 45300 0.66 0.791798
Target:  5'- -aGgCGAcGUGCAGaUCGuUGCGCGCAaaguCCa -3'
miRNA:   3'- cgCgGCU-CACGUC-GGC-ACGCGCGU----GG- -5'
10738 3' -60.8 NC_002794.1 + 12817 0.66 0.791798
Target:  5'- cGUGCuCGAGgucuaccccgaGCAGUCGUGCcaCGaCACCg -3'
miRNA:   3'- -CGCG-GCUCa----------CGUCGGCACGc-GC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 113849 0.66 0.791798
Target:  5'- uGCaGCCuGGcGUGCAGuuCCGgccagGCGCGCucgGCCg -3'
miRNA:   3'- -CG-CGG-CU-CACGUC--GGCa----CGCGCG---UGG- -5'
10738 3' -60.8 NC_002794.1 + 82713 0.66 0.791798
Target:  5'- cGCGCCGAGgac-GCC--GCGC-CACCa -3'
miRNA:   3'- -CGCGGCUCacguCGGcaCGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 92550 0.66 0.791798
Target:  5'- cGCGaCGAG-GUGGCCG-GCGC-CACg -3'
miRNA:   3'- -CGCgGCUCaCGUCGGCaCGCGcGUGg -5'
10738 3' -60.8 NC_002794.1 + 125746 0.66 0.791798
Target:  5'- cGgGCCGcGGgacgGCGGCCG-GCGgCuCGCCa -3'
miRNA:   3'- -CgCGGC-UCa---CGUCGGCaCGC-GcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 145921 0.66 0.791798
Target:  5'- cGCGCCGAGcggaGgGGCCG-GCGagaGCGg- -3'
miRNA:   3'- -CGCGGCUCa---CgUCGGCaCGCg--CGUgg -5'
10738 3' -60.8 NC_002794.1 + 110337 0.66 0.791798
Target:  5'- cGCGCgGGGgGUcuccGCCGUG-GCGaCGCCu -3'
miRNA:   3'- -CGCGgCUCaCGu---CGGCACgCGC-GUGG- -5'
10738 3' -60.8 NC_002794.1 + 111974 0.66 0.786596
Target:  5'- -aGCCGAGcgucagguccaccgGCAcGCCcUGCGCGguCACCa -3'
miRNA:   3'- cgCGGCUCa-------------CGU-CGGcACGCGC--GUGG- -5'
10738 3' -60.8 NC_002794.1 + 194992 0.66 0.786596
Target:  5'- aGCGCCGcGcGCAcgcccuGCCGgGCgaacuccucgaagucGCGCGCCg -3'
miRNA:   3'- -CGCGGCuCaCGU------CGGCaCG---------------CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 135711 0.66 0.786596
Target:  5'- aGCGCuCGAGcugcugcguagcaucUGCAccuGCCGcGC-CGCGCCc -3'
miRNA:   3'- -CGCG-GCUC---------------ACGU---CGGCaCGcGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 184954 0.66 0.783978
Target:  5'- uGCGCCGGcccGcGCAGCCGcucgucgggcagcacGCaGCGCGCg -3'
miRNA:   3'- -CGCGGCU---CaCGUCGGCa--------------CG-CGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 111320 0.66 0.783103
Target:  5'- aCGCCGGGc-CAGCg--GCGCGgGCCg -3'
miRNA:   3'- cGCGGCUCacGUCGgcaCGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 86020 0.66 0.783103
Target:  5'- gGCGCCGAccGUGCGGCgGacagGCcucauCGgGCCg -3'
miRNA:   3'- -CGCGGCU--CACGUCGgCa---CGc----GCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 123510 0.66 0.783103
Target:  5'- uCGCCGGGcugccggccUGCAGCUGguuCGgGCACa -3'
miRNA:   3'- cGCGGCUC---------ACGUCGGCac-GCgCGUGg -5'
10738 3' -60.8 NC_002794.1 + 185468 0.66 0.783103
Target:  5'- aCGCCGcGGgcgGCGGCCGcgGCGaggGgACCg -3'
miRNA:   3'- cGCGGC-UCa--CGUCGGCa-CGCg--CgUGG- -5'
10738 3' -60.8 NC_002794.1 + 188776 0.66 0.777828
Target:  5'- -aGCCcGGUGCAGCgGUaGCGgccggccccgccgaGCGCCg -3'
miRNA:   3'- cgCGGcUCACGUCGgCA-CGCg-------------CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.