Results 41 - 60 of 254 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10738 | 3' | -60.8 | NC_002794.1 | + | 82713 | 0.66 | 0.791798 |
Target: 5'- cGCGCCGAGgac-GCC--GCGC-CACCa -3' miRNA: 3'- -CGCGGCUCacguCGGcaCGCGcGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 92550 | 0.66 | 0.791798 |
Target: 5'- cGCGaCGAG-GUGGCCG-GCGC-CACg -3' miRNA: 3'- -CGCgGCUCaCGUCGGCaCGCGcGUGg -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 125746 | 0.66 | 0.791798 |
Target: 5'- cGgGCCGcGGgacgGCGGCCG-GCGgCuCGCCa -3' miRNA: 3'- -CgCGGC-UCa---CGUCGGCaCGC-GcGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 145921 | 0.66 | 0.791798 |
Target: 5'- cGCGCCGAGcggaGgGGCCG-GCGagaGCGg- -3' miRNA: 3'- -CGCGGCUCa---CgUCGGCaCGCg--CGUgg -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 110337 | 0.66 | 0.791798 |
Target: 5'- cGCGCgGGGgGUcuccGCCGUG-GCGaCGCCu -3' miRNA: 3'- -CGCGgCUCaCGu---CGGCACgCGC-GUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 184954 | 0.66 | 0.783978 |
Target: 5'- uGCGCCGGcccGcGCAGCCGcucgucgggcagcacGCaGCGCGCg -3' miRNA: 3'- -CGCGGCU---CaCGUCGGCa--------------CG-CGCGUGg -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 123510 | 0.66 | 0.783103 |
Target: 5'- uCGCCGGGcugccggccUGCAGCUGguuCGgGCACa -3' miRNA: 3'- cGCGGCUC---------ACGUCGGCac-GCgCGUGg -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 86020 | 0.66 | 0.783103 |
Target: 5'- gGCGCCGAccGUGCGGCgGacagGCcucauCGgGCCg -3' miRNA: 3'- -CGCGGCU--CACGUCGgCa---CGc----GCgUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 92813 | 0.66 | 0.774287 |
Target: 5'- gGCGCCaAGUGCAGCaagaGCGUggaguucgaGCGCUu -3' miRNA: 3'- -CGCGGcUCACGUCGgca-CGCG---------CGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 61823 | 0.66 | 0.774287 |
Target: 5'- gGCgGCCGccgGCGGCCG-GCGUcacuccgcuccGCGCCc -3' miRNA: 3'- -CG-CGGCucaCGUCGGCaCGCG-----------CGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 26094 | 0.66 | 0.774287 |
Target: 5'- aGCGCCGAcGgccccgGCGaucGCCGUGgGCcUGCCu -3' miRNA: 3'- -CGCGGCU-Ca-----CGU---CGGCACgCGcGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 101033 | 0.66 | 0.774287 |
Target: 5'- cGgGCCGGGcGCgggucGGCCGcuacUGCGUGCaggacGCCg -3' miRNA: 3'- -CgCGGCUCaCG-----UCGGC----ACGCGCG-----UGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 127343 | 0.66 | 0.774287 |
Target: 5'- cGCuGCCGAGacgcucGCGGCgGcgGCGCG-GCCg -3' miRNA: 3'- -CG-CGGCUCa-----CGUCGgCa-CGCGCgUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 149975 | 0.66 | 0.774287 |
Target: 5'- cUGCCGcGgaccgGCGGCCGcuaucUGcCGCGCugCu -3' miRNA: 3'- cGCGGCuCa----CGUCGGC-----AC-GCGCGugG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 137650 | 0.66 | 0.774287 |
Target: 5'- gGCGCCGGGccuccgGC-GCCGcugGUGCGgACg -3' miRNA: 3'- -CGCGGCUCa-----CGuCGGCa--CGCGCgUGg -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 186294 | 0.66 | 0.774287 |
Target: 5'- cGCgGCC-AG-GCGGCCGgucgccgcgGCGCGCucguCCu -3' miRNA: 3'- -CG-CGGcUCaCGUCGGCa--------CGCGCGu---GG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 41251 | 0.66 | 0.774287 |
Target: 5'- cCGCCGAcgccgGCGGcCCGUcGuCGCGCuCCg -3' miRNA: 3'- cGCGGCUca---CGUC-GGCA-C-GCGCGuGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 124856 | 0.66 | 0.774287 |
Target: 5'- cCGCCGAcuucaccauggaGUuCAGCucggCGUGCGUGCACg -3' miRNA: 3'- cGCGGCU------------CAcGUCG----GCACGCGCGUGg -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 111320 | 0.66 | 0.783103 |
Target: 5'- aCGCCGGGc-CAGCg--GCGCGgGCCg -3' miRNA: 3'- cGCGGCUCacGUCGgcaCGCGCgUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 188776 | 0.66 | 0.777828 |
Target: 5'- -aGCCcGGUGCAGCgGUaGCGgccggccccgccgaGCGCCg -3' miRNA: 3'- cgCGGcUCACGUCGgCA-CGCg-------------CGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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