Results 21 - 40 of 254 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10738 | 3' | -60.8 | NC_002794.1 | + | 186388 | 0.74 | 0.349541 |
Target: 5'- uCGCCGcAGccGCAGCCGcgGC-CGCACCa -3' miRNA: 3'- cGCGGC-UCa-CGUCGGCa-CGcGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 100825 | 0.74 | 0.356987 |
Target: 5'- gGCGgCGGGggccgGCAGCCGgGCuucCGCACCg -3' miRNA: 3'- -CGCgGCUCa----CGUCGGCaCGc--GCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 56091 | 0.73 | 0.379983 |
Target: 5'- -gGCCGc--GCAGCaCGUGCGUGCugCg -3' miRNA: 3'- cgCGGCucaCGUCG-GCACGCGCGugG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 47741 | 0.73 | 0.379201 |
Target: 5'- cCGCCGGGUccacgugGCGGCCGUGguCGCgGCACa -3' miRNA: 3'- cGCGGCUCA-------CGUCGGCAC--GCG-CGUGg -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 90354 | 0.73 | 0.372209 |
Target: 5'- uGCGUCcuGUGCA-CCGUGCGCGUGCa -3' miRNA: 3'- -CGCGGcuCACGUcGGCACGCGCGUGg -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 114650 | 0.73 | 0.364543 |
Target: 5'- aGCuGCCG-GUGCuGuUCGcGCGCGCGCCg -3' miRNA: 3'- -CG-CGGCuCACGuC-GGCaCGCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 189467 | 0.73 | 0.379983 |
Target: 5'- cGCGCCGAaaGgccGCGGgCGUcGUGUGCACCc -3' miRNA: 3'- -CGCGGCU--Ca--CGUCgGCA-CGCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 99585 | 0.73 | 0.372209 |
Target: 5'- gGUGCgGAGggcGCGGCgGcgGCGCGCGCUc -3' miRNA: 3'- -CGCGgCUCa--CGUCGgCa-CGCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 87866 | 0.73 | 0.387866 |
Target: 5'- cGCGuacCCGuGUGCGuauagucgcGCaCGUGCGCGUACCc -3' miRNA: 3'- -CGC---GGCuCACGU---------CG-GCACGCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 72336 | 0.73 | 0.372209 |
Target: 5'- uGCaGUCG-GUGgAGCCGgugGCGCuGCACCg -3' miRNA: 3'- -CG-CGGCuCACgUCGGCa--CGCG-CGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 91112 | 0.73 | 0.379201 |
Target: 5'- aCGCCGGGcagcUGguGCCGUGCGUggaggagGCGCg -3' miRNA: 3'- cGCGGCUC----ACguCGGCACGCG-------CGUGg -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 150036 | 0.73 | 0.40395 |
Target: 5'- cCGCCGAGUGgAGCCGcuaccgacUGCggugggacgaGCGCGCUc -3' miRNA: 3'- cGCGGCUCACgUCGGC--------ACG----------CGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 157666 | 0.73 | 0.379983 |
Target: 5'- cGCGCUGGcgGCuugGGCCGcuugGCGUGCACCg -3' miRNA: 3'- -CGCGGCUcaCG---UCGGCa---CGCGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 143545 | 0.73 | 0.372209 |
Target: 5'- gGCGCgGcacgagcacGGUGgccCAGCCGUGCGCGCcguCCu -3' miRNA: 3'- -CGCGgC---------UCAC---GUCGGCACGCGCGu--GG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 126383 | 0.73 | 0.379983 |
Target: 5'- gGCGCCGGGgccugcGCGGCgGcGUGCGCGgCg -3' miRNA: 3'- -CGCGGCUCa-----CGUCGgCaCGCGCGUgG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 62683 | 0.73 | 0.364543 |
Target: 5'- cCGCCugcGGGUGCAGCUGUGUcgGCGgcCGCCg -3' miRNA: 3'- cGCGG---CUCACGUCGGCACG--CGC--GUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 38457 | 0.73 | 0.395856 |
Target: 5'- -aGCCG-GcGCGGCCGcgGCGCGC-CCu -3' miRNA: 3'- cgCGGCuCaCGUCGGCa-CGCGCGuGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 193582 | 0.72 | 0.419616 |
Target: 5'- cGCGCCG-GUgGCGGCucaccguCGUGUaGCGUACCg -3' miRNA: 3'- -CGCGGCuCA-CGUCG-------GCACG-CGCGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 107050 | 0.72 | 0.412149 |
Target: 5'- cGCGUCgGAG-GCGGCgG-GCGCgGCGCCg -3' miRNA: 3'- -CGCGG-CUCaCGUCGgCaCGCG-CGUGG- -5' |
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10738 | 3' | -60.8 | NC_002794.1 | + | 76559 | 0.72 | 0.412149 |
Target: 5'- cGCGCCGGGUacucacccgGCccGCCGc-CGCGCACCc -3' miRNA: 3'- -CGCGGCUCA---------CGu-CGGCacGCGCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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