miRNA display CGI


Results 61 - 80 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 69724 0.71 0.481234
Target:  5'- cCGUCGAGUGCcGCCGga-GCGCcacgGCCg -3'
miRNA:   3'- cGCGGCUCACGuCGGCacgCGCG----UGG- -5'
10738 3' -60.8 NC_002794.1 + 71228 0.71 0.472281
Target:  5'- -gGCCGcguAGUgGCGGCCG-GCGUGgACCg -3'
miRNA:   3'- cgCGGC---UCA-CGUCGGCaCGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 126614 0.71 0.472281
Target:  5'- gGCGCCGAcGUcGCGG-CGUGaGCGCgACCg -3'
miRNA:   3'- -CGCGGCU-CA-CGUCgGCACgCGCG-UGG- -5'
10738 3' -60.8 NC_002794.1 + 191671 0.71 0.49938
Target:  5'- gGCGCCGGcaGCGGCgGcgGCGUGC-CCu -3'
miRNA:   3'- -CGCGGCUcaCGUCGgCa-CGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 58655 0.71 0.471391
Target:  5'- gGCGaCGGGcUGCugcagccGGCCGUGCacGCGCACUa -3'
miRNA:   3'- -CGCgGCUC-ACG-------UCGGCACG--CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 101577 0.71 0.481234
Target:  5'- aGUGCCGGccgccGCGGCCGgggggGCGgGUGCCg -3'
miRNA:   3'- -CGCGGCUca---CGUCGGCa----CGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 145119 0.71 0.49938
Target:  5'- gGUGUCGGG-GCAGCUcaugcUGCGgGCGCCc -3'
miRNA:   3'- -CGCGGCUCaCGUCGGc----ACGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 34839 0.71 0.490268
Target:  5'- gGCGCCG-GaGCGGgCGUcggaGCGgGCGCCg -3'
miRNA:   3'- -CGCGGCuCaCGUCgGCA----CGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 12232 0.71 0.49938
Target:  5'- gGCGCCGGcgGC-GCCGUcCGCgGCGCCg -3'
miRNA:   3'- -CGCGGCUcaCGuCGGCAcGCG-CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 34720 0.71 0.490268
Target:  5'- gGCGCCacGAGgcgcggGCGGCCGcagaGCGCGCGa- -3'
miRNA:   3'- -CGCGG--CUCa-----CGUCGGCa---CGCGCGUgg -5'
10738 3' -60.8 NC_002794.1 + 152220 0.71 0.508567
Target:  5'- gGCGUCGGacGUcGCGcGCCacGUcGCGCGCACCg -3'
miRNA:   3'- -CGCGGCU--CA-CGU-CGG--CA-CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 122296 0.71 0.506724
Target:  5'- gGCGCgagGAGUGCccgcuggccgucGCCGUGCGCGUGgCg -3'
miRNA:   3'- -CGCGg--CUCACGu-----------CGGCACGCGCGUgG- -5'
10738 3' -60.8 NC_002794.1 + 102165 0.71 0.508567
Target:  5'- cGCGCCGGG-GCcaUCGUgGCGCGCGgCg -3'
miRNA:   3'- -CGCGGCUCaCGucGGCA-CGCGCGUgG- -5'
10738 3' -60.8 NC_002794.1 + 186645 0.71 0.472281
Target:  5'- cCGCgCGGGU-CGGCC--GCGCGCACCc -3'
miRNA:   3'- cGCG-GCUCAcGUCGGcaCGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 37740 0.7 0.536533
Target:  5'- gGCGCCGccGGcgGCGGCgCG-GCG-GCGCCg -3'
miRNA:   3'- -CGCGGC--UCa-CGUCG-GCaCGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 39019 0.7 0.527148
Target:  5'- uGUGCUGGG-GCAagaucuacuuucGCCGggacgGCGgGCACCa -3'
miRNA:   3'- -CGCGGCUCaCGU------------CGGCa----CGCgCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 145217 0.7 0.527148
Target:  5'- aGCGCUccuucGUGguGUCGgagGCGCGCGCg -3'
miRNA:   3'- -CGCGGcu---CACguCGGCa--CGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 126296 0.7 0.536533
Target:  5'- uGCGCCGcgcgccuggcGGUGCAGCgGaGCGUG-ACCc -3'
miRNA:   3'- -CGCGGC----------UCACGUCGgCaCGCGCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 130459 0.7 0.536533
Target:  5'- gGCGgCGAGgcgcugGCGGCU-UGCGUGCGCg -3'
miRNA:   3'- -CGCgGCUCa-----CGUCGGcACGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 183608 0.7 0.536533
Target:  5'- gGgGCCGcGcGCGGCCG-GCGCccccGCGCCc -3'
miRNA:   3'- -CgCGGCuCaCGUCGGCaCGCG----CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.