miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 144435 1.12 0.000889
Target:  5'- uGCGCCGAGUGCAGCCGUGCGCGCACCu -3'
miRNA:   3'- -CGCGGCUCACGUCGGCACGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 58866 0.83 0.098131
Target:  5'- uCGCCGAccgGCAGCCGUGCGCGcCGCg -3'
miRNA:   3'- cGCGGCUca-CGUCGGCACGCGC-GUGg -5'
10738 3' -60.8 NC_002794.1 + 137993 0.8 0.145822
Target:  5'- aGCGCUG-GUGCAGCUGgGCGCGCAg- -3'
miRNA:   3'- -CGCGGCuCACGUCGGCaCGCGCGUgg -5'
10738 3' -60.8 NC_002794.1 + 183509 0.79 0.172734
Target:  5'- gGCcCCGAGacccaugucGCGGCCGUGCGCGCcCCg -3'
miRNA:   3'- -CGcGGCUCa--------CGUCGGCACGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 187446 0.78 0.205918
Target:  5'- cGCGCCGucUGCcGCCGcucggcgucgcucgGCGCGCGCCg -3'
miRNA:   3'- -CGCGGCucACGuCGGCa-------------CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 112855 0.77 0.213783
Target:  5'- cGCGCCGca-GCAGCUGcUGCaGCGCGCCc -3'
miRNA:   3'- -CGCGGCucaCGUCGGC-ACG-CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 122988 0.77 0.223976
Target:  5'- cGCGCCuGGUGCgGGCCGUGCuGaCGgGCCg -3'
miRNA:   3'- -CGCGGcUCACG-UCGGCACG-C-GCgUGG- -5'
10738 3' -60.8 NC_002794.1 + 60642 0.77 0.223976
Target:  5'- gGCGCCGGcgGC-GCCGgccacccgGCGCGCGCCg -3'
miRNA:   3'- -CGCGGCUcaCGuCGGCa-------CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 187845 0.76 0.257046
Target:  5'- cGCGCCGAGggcucUGCccAGCCGcGCGCGgcuCGCCg -3'
miRNA:   3'- -CGCGGCUC-----ACG--UCGGCaCGCGC---GUGG- -5'
10738 3' -60.8 NC_002794.1 + 12425 0.76 0.268926
Target:  5'- cGCGCCGAcugGCAGCUGUcccGCGUcaGCGCCc -3'
miRNA:   3'- -CGCGGCUca-CGUCGGCA---CGCG--CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 58530 0.75 0.275031
Target:  5'- aCGCCGAG-GCcuucGCCGcgGCGCGCGCg -3'
miRNA:   3'- cGCGGCUCaCGu---CGGCa-CGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 867 0.75 0.275031
Target:  5'- cGCGCCcgcGAG-GCGGUcggCGUGCGCGCggGCCg -3'
miRNA:   3'- -CGCGG---CUCaCGUCG---GCACGCGCG--UGG- -5'
10738 3' -60.8 NC_002794.1 + 120100 0.75 0.300557
Target:  5'- cGUGCCGAGcGCGccGCgCGUGaCGCGCGCg -3'
miRNA:   3'- -CGCGGCUCaCGU--CG-GCAC-GCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 23907 0.75 0.307218
Target:  5'- -aGCCGAGUGCAGCagCGUGgGCGaGCg -3'
miRNA:   3'- cgCGGCUCACGUCG--GCACgCGCgUGg -5'
10738 3' -60.8 NC_002794.1 + 192424 0.75 0.313991
Target:  5'- cGCGaCGGGUccGCGGCCGgcgcGuCGCGCGCCu -3'
miRNA:   3'- -CGCgGCUCA--CGUCGGCa---C-GCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 193180 0.74 0.320876
Target:  5'- cGCGCCGcgccagcGUGUccaGGUCGUGCGC-CACCa -3'
miRNA:   3'- -CGCGGCu------CACG---UCGGCACGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 101800 0.74 0.320876
Target:  5'- uGCGCCGcuGGUuggcgcagcgGCGcGCCGUGCGCGagGCCa -3'
miRNA:   3'- -CGCGGC--UCA----------CGU-CGGCACGCGCg-UGG- -5'
10738 3' -60.8 NC_002794.1 + 139449 0.74 0.320876
Target:  5'- cGCGCCGAucgGCAgGUCGU-CGUGCGCCa -3'
miRNA:   3'- -CGCGGCUca-CGU-CGGCAcGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 100567 0.74 0.330705
Target:  5'- -gGCCGAGcgGCaccucuucacgcucgGGCCGUGCGCGCcgauCCc -3'
miRNA:   3'- cgCGGCUCa-CG---------------UCGGCACGCGCGu---GG- -5'
10738 3' -60.8 NC_002794.1 + 186388 0.74 0.349541
Target:  5'- uCGCCGcAGccGCAGCCGcgGC-CGCACCa -3'
miRNA:   3'- cGCGGC-UCa-CGUCGGCa-CGcGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.