miRNA display CGI


Results 21 - 40 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10738 3' -60.8 NC_002794.1 + 78684 0.74 0.349541
Target:  5'- cCGCCGGccgcauGUGCGGCCGacacgGCGC-CGCCa -3'
miRNA:   3'- cGCGGCU------CACGUCGGCa----CGCGcGUGG- -5'
10738 3' -60.8 NC_002794.1 + 100825 0.74 0.356987
Target:  5'- gGCGgCGGGggccgGCAGCCGgGCuucCGCACCg -3'
miRNA:   3'- -CGCgGCUCa----CGUCGGCaCGc--GCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 62683 0.73 0.364543
Target:  5'- cCGCCugcGGGUGCAGCUGUGUcgGCGgcCGCCg -3'
miRNA:   3'- cGCGG---CUCACGUCGGCACG--CGC--GUGG- -5'
10738 3' -60.8 NC_002794.1 + 114650 0.73 0.364543
Target:  5'- aGCuGCCG-GUGCuGuUCGcGCGCGCGCCg -3'
miRNA:   3'- -CG-CGGCuCACGuC-GGCaCGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 72336 0.73 0.372209
Target:  5'- uGCaGUCG-GUGgAGCCGgugGCGCuGCACCg -3'
miRNA:   3'- -CG-CGGCuCACgUCGGCa--CGCG-CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 99585 0.73 0.372209
Target:  5'- gGUGCgGAGggcGCGGCgGcgGCGCGCGCUc -3'
miRNA:   3'- -CGCGgCUCa--CGUCGgCa-CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 90354 0.73 0.372209
Target:  5'- uGCGUCcuGUGCA-CCGUGCGCGUGCa -3'
miRNA:   3'- -CGCGGcuCACGUcGGCACGCGCGUGg -5'
10738 3' -60.8 NC_002794.1 + 143545 0.73 0.372209
Target:  5'- gGCGCgGcacgagcacGGUGgccCAGCCGUGCGCGCcguCCu -3'
miRNA:   3'- -CGCGgC---------UCAC---GUCGGCACGCGCGu--GG- -5'
10738 3' -60.8 NC_002794.1 + 91112 0.73 0.379201
Target:  5'- aCGCCGGGcagcUGguGCCGUGCGUggaggagGCGCg -3'
miRNA:   3'- cGCGGCUC----ACguCGGCACGCG-------CGUGg -5'
10738 3' -60.8 NC_002794.1 + 47741 0.73 0.379201
Target:  5'- cCGCCGGGUccacgugGCGGCCGUGguCGCgGCACa -3'
miRNA:   3'- cGCGGCUCA-------CGUCGGCAC--GCG-CGUGg -5'
10738 3' -60.8 NC_002794.1 + 56091 0.73 0.379983
Target:  5'- -gGCCGc--GCAGCaCGUGCGUGCugCg -3'
miRNA:   3'- cgCGGCucaCGUCG-GCACGCGCGugG- -5'
10738 3' -60.8 NC_002794.1 + 126383 0.73 0.379983
Target:  5'- gGCGCCGGGgccugcGCGGCgGcGUGCGCGgCg -3'
miRNA:   3'- -CGCGGCUCa-----CGUCGgCaCGCGCGUgG- -5'
10738 3' -60.8 NC_002794.1 + 157666 0.73 0.379983
Target:  5'- cGCGCUGGcgGCuugGGCCGcuugGCGUGCACCg -3'
miRNA:   3'- -CGCGGCUcaCG---UCGGCa---CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 189467 0.73 0.379983
Target:  5'- cGCGCCGAaaGgccGCGGgCGUcGUGUGCACCc -3'
miRNA:   3'- -CGCGGCU--Ca--CGUCgGCA-CGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 87866 0.73 0.387866
Target:  5'- cGCGuacCCGuGUGCGuauagucgcGCaCGUGCGCGUACCc -3'
miRNA:   3'- -CGC---GGCuCACGU---------CG-GCACGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 38457 0.73 0.395856
Target:  5'- -aGCCG-GcGCGGCCGcgGCGCGC-CCu -3'
miRNA:   3'- cgCGGCuCaCGUCGGCa-CGCGCGuGG- -5'
10738 3' -60.8 NC_002794.1 + 150036 0.73 0.40395
Target:  5'- cCGCCGAGUGgAGCCGcuaccgacUGCggugggacgaGCGCGCUc -3'
miRNA:   3'- cGCGGCUCACgUCGGC--------ACG----------CGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 76559 0.72 0.412149
Target:  5'- cGCGCCGGGUacucacccgGCccGCCGc-CGCGCACCc -3'
miRNA:   3'- -CGCGGCUCA---------CGu-CGGCacGCGCGUGG- -5'
10738 3' -60.8 NC_002794.1 + 107050 0.72 0.412149
Target:  5'- cGCGUCgGAG-GCGGCgG-GCGCgGCGCCg -3'
miRNA:   3'- -CGCGG-CUCaCGUCGgCaCGCG-CGUGG- -5'
10738 3' -60.8 NC_002794.1 + 193582 0.72 0.419616
Target:  5'- cGCGCCG-GUgGCGGCucaccguCGUGUaGCGUACCg -3'
miRNA:   3'- -CGCGGCuCA-CGUCG-------GCACG-CGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.